Jatropha Genome Database

JcCB0460891.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0460891.10 - phase: 0 
         (121 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30055.m001532 oxidoreductase, acting on the CH-CH group of donor...    83   2e-17
29791.m000527 Male sterility protein, putative                         71   1e-13
30055.m001531 Male sterility protein, putative                         61   1e-10

>30055.m001532 oxidoreductase, acting on the CH-CH group of donors,
           putative
          Length = 414

 Score = 83.2 bits (204), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/66 (72%), Positives = 57/66 (86%), Gaps = 3/66 (4%)

Query: 13  HTNEPSDNAM---GSSVRNPVRYSNLQDFGLSYFTRNPWIGKDEKPVKVGKVKVLDNMNS 69
           H N PS+NA+   GSSVR+P+RY+NLQD+GL+YFT+ PWIGKD KPVKVGKVKVLD+M S
Sbjct: 248 HANRPSENAIYQVGSSVRHPLRYANLQDYGLNYFTKKPWIGKDGKPVKVGKVKVLDSMAS 307

Query: 70  FPRYMA 75
           F RYMA
Sbjct: 308 FRRYMA 313


>29791.m000527 Male sterility protein, putative
          Length = 493

 Score = 71.2 bits (173), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/54 (55%), Positives = 40/54 (74%)

Query: 22  MGSSVRNPVRYSNLQDFGLSYFTRNPWIGKDEKPVKVGKVKVLDNMNSFPRYMA 75
           +GSS+RNP+++SN+ DF   YF+ NPWI K+  PVK+GK  VL +M SF  YMA
Sbjct: 337 IGSSLRNPLKFSNIHDFAYRYFSANPWIDKEGSPVKIGKGIVLSSMTSFHMYMA 390


>30055.m001531 Male sterility protein, putative
          Length = 493

 Score = 61.2 bits (147), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/54 (48%), Positives = 36/54 (66%)

Query: 22  MGSSVRNPVRYSNLQDFGLSYFTRNPWIGKDEKPVKVGKVKVLDNMNSFPRYMA 75
           +GSS+RNP++ S++ DF   YF+ NPWI K+  PVK  K  +L +M  F  YMA
Sbjct: 337 IGSSLRNPLKLSSVNDFSYRYFSANPWINKEGVPVKTSKAIILSSMTKFYIYMA 390