Jatropha Genome Database

JcCB0458961.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0458961.10 + phase: 0 /pseudo/partial
         (252 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29585.m000607 2-oxoglutarate dehydrogenase, putative                  207   3e-54
29585.m000604 2-oxoglutarate dehydrogenase, putative                  134   3e-32

>29585.m000607 2-oxoglutarate dehydrogenase, putative
          Length = 1021

 Score =  207 bits (528), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 97/111 (87%), Positives = 104/111 (93%), Gaps = 3/111 (2%)

Query: 135 QPLLITSMSCGASLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNDHADLEEGI 194
           +PL++ +     +LLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNDH+DLEEGI
Sbjct: 836 KPLIVMAPK---NLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNDHSDLEEGI 892

Query: 195 RRLVLCSGKVYYELDEERKKTGAKDVAICRVEQLCPFPYDLIQRELKRYPS 245
           RRLVLCSGKVYYELDEERKK GAKDVAICRVEQLCPFPYDLIQRELKRYP+
Sbjct: 893 RRLVLCSGKVYYELDEERKKIGAKDVAICRVEQLCPFPYDLIQRELKRYPN 943



 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 25/29 (86%), Positives = 28/29 (96%)

Query: 1   VHDQENGEKYCPLDHVVMNQDEEMFTVSN 29
           +HDQE GEKYCPLDHV+MNQ+EEMFTVSN
Sbjct: 675 IHDQETGEKYCPLDHVIMNQNEEMFTVSN 703


>29585.m000604 2-oxoglutarate dehydrogenase, putative
          Length = 529

 Score =  134 bits (338), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 60/77 (77%), Positives = 70/77 (90%)

Query: 169 GFDKQGTRFKRLIKDQNDHADLEEGIRRLVLCSGKVYYELDEERKKTGAKDVAICRVEQL 228
           G DKQGTRFKRL+KDQN+H+DLEEGIRRL+LCSGKVYYELDE+R +   K++AICRVE+L
Sbjct: 375 GSDKQGTRFKRLVKDQNNHSDLEEGIRRLLLCSGKVYYELDEKRDRVNGKNIAICRVEEL 434

Query: 229 CPFPYDLIQRELKRYPS 245
            PFPYDLIQRELKR P+
Sbjct: 435 SPFPYDLIQRELKRCPN 451