Jatropha Genome Database

JcCB0456651.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0456651.10 - phase: 2 /partial
         (176 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30006.m000282 DNA binding protein, putative                           211   2e-55

>30006.m000282 DNA binding protein, putative
          Length = 440

 Score =  211 bits (536), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 110/176 (62%), Positives = 119/176 (67%), Gaps = 3/176 (1%)

Query: 1   SRWDSSFSRMPGSEYFSSINYGAADDPASESDYVGSLCFERKIDLTSYIKWWGSNKTRQX 60
           S+WDSSF RMPGSEYFSSINYGAADDPA+ES+YVGSLCFERKIDLTSYI+WWG NKTR+ 
Sbjct: 172 SQWDSSFGRMPGSEYFSSINYGAADDPAAESEYVGSLCFERKIDLTSYIRWWGFNKTRE- 230

Query: 61  XXXXXXXXXXXHGYAEDVGGELKTSEWAVQPTEPYQMPCLGMPIDGKKHXXXXXXXXXXX 120
                      HGY ED+  ELK+SEWAVQ TEPYQMP LGMP +GKKH           
Sbjct: 231 -SVSKSSDERKHGYGEDI-SELKSSEWAVQSTEPYQMPRLGMPDNGKKHKCSKISALSIL 288

Query: 121 XXXXXXXXXQERASKKQXXXXXXXXXXXXXXXKMDYGKAVEKSTSHDNSNERLGVA 176
                    QE+ASKKQ               KMDYGKAVEKSTSHD SNERLG A
Sbjct: 289 SHSAAYKNLQEKASKKQENCTDNDEKENKKTNKMDYGKAVEKSTSHDGSNERLGAA 344