Jatropha Genome Database

JcCB0456251.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0456251.10 - phase: 2 /pseudo/partial
         (185 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30076.m004551 conserved hypothetical protein                          119   9e-28

>30076.m004551 conserved hypothetical protein
          Length = 980

 Score =  119 bits (298), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 69/133 (51%), Positives = 84/133 (63%), Gaps = 6/133 (4%)

Query: 20  MAAPLCDXXXXXXXXXXXXFPPNSLVANEIYHGKTRLVTSFFGAKSPKMLGSAAKTWKLE 79
           MAA L +            FP  SL  ++ +  KT++ +SF+G K   +    AK   L 
Sbjct: 1   MAASLLESPLVNRYPSISSFPIKSLATSQNHMPKTQIGSSFYGTK---LFSCGAK---LG 54

Query: 80  XXXXXXMVAMASLGGLLGGIFKGTDTGESTRQQYAPTVRLINGLETEMSALSDSELRNKT 139
                    +ASLGGLLGGIFKGTDTGE+TRQQYA TV +IN LE+EMSALSDS+LR+KT
Sbjct: 55  SKRRQRRSIVASLGGLLGGIFKGTDTGEATRQQYAQTVNVINKLESEMSALSDSQLRDKT 114

Query: 140 SVLKERALNGESL 152
             LKERA NGESL
Sbjct: 115 CALKERAQNGESL 127