Jatropha Genome Database

JcCB0456051.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0456051.10 - phase: 1 /pseudo/partial
         (223 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30131.m007139 arginine decarboxylase, putative                        253   5e-68

>30131.m007139 arginine decarboxylase, putative
          Length = 724

 Score =  253 bits (646), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 136/164 (82%), Positives = 144/164 (87%)

Query: 33  GLEAGSKPELLLAMSCLCKGNPDSFLVCNGFKDAEYISLALLARKLALNTXXXXXXXXXX 92
           GLEAGSKPELLLAMSCLCKG+PD+ LVCNGFKD EYISLALLARKLALNT          
Sbjct: 176 GLEAGSKPELLLAMSCLCKGSPDALLVCNGFKDGEYISLALLARKLALNTVIVLEQEEEL 235

Query: 93  XXXXXMSKKLSIRPVIGVRAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEGAGML 152
                +SKK+S+RPVIGVRAKLRT+HSGHFGSTSGEKGKFGLTT QILRVVKKLE AGML
Sbjct: 236 DLVIGLSKKMSVRPVIGVRAKLRTRHSGHFGSTSGEKGKFGLTTIQILRVVKKLEEAGML 295

Query: 153 DCLQLLHFHIGSQIPSTALLADGVGEAAQIYCELVRLGAQMQVL 196
           DCLQLLHFHIGSQIPST+LLADGVGEAAQIYCELVRLGA MQV+
Sbjct: 296 DCLQLLHFHIGSQIPSTSLLADGVGEAAQIYCELVRLGANMQVI 339