Jatropha Genome Database

JcCB0455001.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0455001.10 - phase: 1 /pseudo/partial
         (287 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30076.m004545 protoporphyrinogen oxidase, chloroplast precursor,...   190   8e-49

>30076.m004545 protoporphyrinogen oxidase, chloroplast precursor,
           putative
          Length = 536

 Score =  190 bits (482), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 90/100 (90%), Positives = 96/100 (96%)

Query: 188 QTQSELVEAVDRELRKMLIKPNAKDPFVLGVRVWPQAIPQFLIGHFDILDAAKGALRDKG 247
           +T++ELVEAVDR+LRKMLIKPNAKDPFVLGVRVWPQAIPQFL+GH DILD+AKGAL D G
Sbjct: 437 KTETELVEAVDRDLRKMLIKPNAKDPFVLGVRVWPQAIPQFLVGHLDILDSAKGALGDAG 496

Query: 248 LEGLFLGGNYVSGVALGRCVEGAYEVAAEVTNFLSQYAYK 287
           LEGLFLGGNYVSGVALGRCVEGAYEVAAEVTNFLSQ AYK
Sbjct: 497 LEGLFLGGNYVSGVALGRCVEGAYEVAAEVTNFLSQNAYK 536