Jatropha Genome Database

JcCB0454891.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0454891.10 + phase: 0 /pseudo
         (261 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29656.m000473 cell cycle checkpoint protein rad17, putative           329   8e-91

>29656.m000473 cell cycle checkpoint protein rad17, putative
          Length = 439

 Score =  329 bits (843), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 168/244 (68%), Positives = 189/244 (77%), Gaps = 2/244 (0%)

Query: 12  ILGTQYMSKLDEFVNFIEKVRKYGSIPPSYSAESKXXXXXXXXXXXVTNGRVAFERLQNC 71
           +LG  Y SKLDEF+NFIEK+RKYG IP S+SAESK           V NGR AFERLQNC
Sbjct: 11  VLGVNYTSKLDEFMNFIEKIRKYGLIP-SFSAESKSPVMLLIDDLPVANGRAAFERLQNC 69

Query: 72  LLLLVRTTRIPTVILVTDYDKADLADNTSRYMEELQSSLESAGACKVAFNPITNNSIKKA 131
           LLLLVR+T++PT IL+TDY K D AD ++RYMEEL  SLE AGACKVAFNPIT++SIKK 
Sbjct: 70  LLLLVRSTQVPTAILLTDYGKEDSADYSARYMEELLQSLERAGACKVAFNPITSSSIKKV 129

Query: 132 LTKICKHEQFNVTAEQIDLIAKASGGDIRNAITSLQLFCVKPN-MGXXXXXXXXTPSYSD 190
           LT+ICK +Q NVTAEQI+LIAKASGGDIR+AITSLQLF VKP+ M         TPSYSD
Sbjct: 130 LTRICKQKQHNVTAEQIELIAKASGGDIRHAITSLQLFSVKPDIMLSLSSLSTLTPSYSD 189

Query: 191 GKPDDINSLICGFSLLFGRDETLSLFHALGKFLHNKRETEVTMGSDVCYFFYGTKFSRLP 250
           G+ D+IN+L  GFSLLFGRDETLSLFHALGKFLHNKRETE     D   F    KFSRLP
Sbjct: 190 GRADEINALTSGFSLLFGRDETLSLFHALGKFLHNKRETEAPSVFDQDAFLVRDKFSRLP 249

Query: 251 LEMD 254
           L+MD
Sbjct: 250 LKMD 253