Jatropha Genome Database

JcCB0454241.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0454241.10 + phase: 0 
         (408 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30190.m011226 UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diamin...   692   0.0  
28000.m000055 UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diamin...   148   5e-36

>30190.m011226
           UDP-n-acetylmuramoylalanyl-d-glutamate--2,
           6-diaminopimelate ligase, putative
          Length = 780

 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/385 (88%), Positives = 357/385 (92%), Gaps = 1/385 (0%)

Query: 1   MSLAELLDESKVVPVSVAGDLEVEITGIQHDSRMVNAGDLFVCCVGRKTDGHLYLSEADK 60
           MSLAELLDESKVVPVSVAGDLEVEITGIQHDSRMVNAGDLFVCCVGR+TDGHLYLSEADK
Sbjct: 243 MSLAELLDESKVVPVSVAGDLEVEITGIQHDSRMVNAGDLFVCCVGRRTDGHLYLSEADK 302

Query: 61  RGAVAVVASKEIDIEETLGCKGLVIVEDTNAVLPALAAAFYKYPSKNMAVIGITGTDGKT 120
           RGAVAVVASKEIDIEETLGCK LVIVEDTNAVLPAL+AAFYKYPSKNMAVIGI+GT+GKT
Sbjct: 303 RGAVAVVASKEIDIEETLGCKALVIVEDTNAVLPALSAAFYKYPSKNMAVIGISGTNGKT 362

Query: 121 TAAYLIKGMYEAMGLRTGMLSTVAYYIHGDNKLESPNTAPDAVLVQNLMAKMVHNGTEAV 180
           T AYLIKGMYEAMGLRTGM STVAYY+HGDNKLESPNT PDAVLVQNLMAKM+HNGTEAV
Sbjct: 363 TTAYLIKGMYEAMGLRTGMFSTVAYYVHGDNKLESPNTTPDAVLVQNLMAKMLHNGTEAV 422

Query: 181 VMEVSSQGPASGSCNEVDFDISVFTNLRVDHLD-FQGTEEEYRDAKAELFARMVDPERHR 239
           VME SS G ASG C+EVDFDI+VFTNL  DHLD F GTEEEYRDAKA+LFARMVDPERHR
Sbjct: 423 VMEASSHGLASGRCDEVDFDIAVFTNLTGDHLDSFHGTEEEYRDAKAKLFARMVDPERHR 482

Query: 240 KIVNIEDPNASFFIAQGNPDVPVVTFAMDNKSADVHPLKFELSLFETQVLVNTPHGILEI 299
           KIVNI+D NASFFIAQGNPDVPVVTFA++NKSADVHPLKFELSLFETQVLVNTPHGILEI
Sbjct: 483 KIVNIDDSNASFFIAQGNPDVPVVTFAIENKSADVHPLKFELSLFETQVLVNTPHGILEI 542

Query: 300 SSGLLGRHNIYNILXXXXXXXXXXXPLEDIVRGIEEIDAVPGRCELIDEEQAFGVIVDSA 359
           SSGLLGRHNIYNIL           PLEDIVRGIEE+DAVPGRCELIDEEQAFGVIVD A
Sbjct: 543 SSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYA 602

Query: 360 HTPEALSRLLDSVRELRPRRIITGI 384
           HTP+ LS LLDSVREL+P+RIIT I
Sbjct: 603 HTPDGLSILLDSVRELKPKRIITVI 627


>28000.m000055
           UDP-n-acetylmuramoylalanyl-d-glutamate--2,
           6-diaminopimelate ligase, putative
          Length = 850

 Score =  148 bits (373), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 109/358 (30%), Positives = 172/358 (48%), Gaps = 22/358 (6%)

Query: 25  ITGIQHDSRMVNAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVA-SKEIDIEETLGCKGL 83
           + GI  DSR V    LF+   G+ +DG  Y+ +A  +GA  V+  S+  D +       +
Sbjct: 386 VHGITADSRQVEKHGLFLAYPGQHSDGRDYIEDAIAKGANTVIWDSQGFDWKPEWQVHNI 445

Query: 84  VIVEDTNAVLPALAAAFYKYPSKNMAVIGITGTDGKTTAAYLIKGMYEAMGLRTGMLSTV 143
            I  D  + +  +A+ FYK PS+ M  +G+TGT+GKTT  + +   Y  +  ++ ++ T+
Sbjct: 446 AIA-DLKSQVGHIASQFYKDPSEQMWCVGVTGTNGKTTVTHWLAQAYRFLQQKSAVIGTL 504

Query: 144 AYYIHGDNKLE----SPNTAPDAVLVQNLMAKMVHNGTEAVVMEVSSQGPASGSCNEVDF 199
                G+  LE    + NT P  V +Q ++A  V +    V MEVSS G   G  N V F
Sbjct: 505 -----GNGALEDLQATQNTTPGPVELQKMLATFVLDDVRMVAMEVSSHGLDQGRVNGVAF 559

Query: 200 DISVFTNLRVDHLDFQGTEEEYRDAKAELFARMVDPERHRKIVNIEDPNASFFI----AQ 255
           D++V TN+  DHLD+  T E Y+ AK +LF           +VN +DP     I     Q
Sbjct: 560 DVAVLTNITRDHLDYHLTMEAYQAAKRKLFDWQT---LSAAVVNADDPFGLALIEDLRKQ 616

Query: 256 GNPDVPVVTFAMDNKSADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILXX 315
           G     V+++ + +  ADV      +     ++ V T  G  +I    LG+ N+YN L  
Sbjct: 617 GK---KVLSYGL-HAQADVCATAVTMHATGFEIQVRTAQGTGDIQLHALGQFNVYNALAV 672

Query: 316 XXXXXXXXXPLEDIVRGIEEIDAVPGRCELIDEEQAFGVIVDSAHTPEALSRLLDSVR 373
                     L   ++ +  +  V GR ++        V+VD AHTP+AL + L ++R
Sbjct: 673 LTCLLVNEVALPAALQAVSGLVPVAGRMQMFGGGDLPLVVVDYAHTPDALEKALHTLR 730