Jatropha Genome Database

JcCB0453831.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0453831.10 - phase: 2 /partial
         (212 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30131.m007080 ubiquitin-protein ligase, putative                      315   1e-86
30170.m014089 ubiquitin-protein ligase, putative                      202   1e-52
29950.m001165 ubiquitin-protein ligase, putative                       85   3e-17
29813.m001511 conserved hypothetical protein                           77   8e-15
27394.m000346 hypothetical protein                                     65   2e-11
30131.m006890 conserved hypothetical protein                           47   7e-06

>30131.m007080 ubiquitin-protein ligase, putative
          Length = 433

 Score =  315 bits (806), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 152/212 (71%), Positives = 170/212 (80%), Gaps = 2/212 (0%)

Query: 1   HAFSELMATSHRERWSFDTESWGLNHEKTRXXXXXXXXXXVDFQTCGICSKLLTEKSLWS 60
           HAFSELMA SH+E+WS D +S G NHE TR          VD QTCGIC+KLLTEKSLWS
Sbjct: 224 HAFSELMANSHKEKWSLD-DSLGYNHENTRSSGRLSASPSVDLQTCGICTKLLTEKSLWS 282

Query: 61  SQKLVLSNELSVVAVLTCGHVYHAECLETLTPDINKYDPSCPVCTLGEKQTHKLSQKAFK 120
           SQKLVL+NELSVVAVL CGHVYHAECLET+TP+I+KYDPSCP+CTLGEKQTHKLSQKAFK
Sbjct: 283 SQKLVLNNELSVVAVLICGHVYHAECLETMTPEIHKYDPSCPICTLGEKQTHKLSQKAFK 342

Query: 121 AELDLKAKNKRSRNRVVDSDLDGDSVMFNRLKGSGHEXXXXXXXXXXXXXXXXXXXFLKR 180
           AE+DLKAKNKRSRNR+VDSDL+GDS+MF+R+KG GHE                   FLKR
Sbjct: 343 AEMDLKAKNKRSRNRIVDSDLNGDSIMFDRIKGGGHEGKGPKMTSSSSLKSTLAKPFLKR 402

Query: 181 HFSFGSSKASKSLTENHATKKKGFFWTRSMKA 212
           HFSFG SK SK+LTENH+TKKK FFWTRS+K 
Sbjct: 403 HFSFG-SKGSKALTENHSTKKKEFFWTRSLKV 433


>30170.m014089 ubiquitin-protein ligase, putative
          Length = 439

 Score =  202 bits (513), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 110/211 (52%), Positives = 139/211 (65%), Gaps = 7/211 (3%)

Query: 3   FSELMATSHRERWSFDTESWGLNHEKTRXXXXXXX-XXXVDFQTCGICSKLLTEKSLWSS 61
           FSEL+A+S RERWSFD+E +G    K             +D QTCG CSK LTEKS WSS
Sbjct: 233 FSELVASSQRERWSFDSEHFGYGFGKASGCSSRFSCSPSLDLQTCGACSKFLTEKSSWSS 292

Query: 62  QKLVLSNELSVVAVLTCGHVYHAECLETLTPDINKYDPSCPVCTLGEKQTHKLSQKAFKA 121
           Q+++ +NELSVV+VL CGHVYHAECLET+T +++KYDP+CP+C  GEKQ  K+S+KA KA
Sbjct: 293 QRILSNNELSVVSVLVCGHVYHAECLETMTLEVDKYDPACPICMGGEKQVSKMSKKALKA 352

Query: 122 ELDLKAKN-KRSRNRVVDSDLDGDSVMFNRLKGSGHEXXXXXXXXXXXXXXXXXXXFLKR 180
           E +LKA++ K SRNRVVDS LD DS  F+  K +                      FL+R
Sbjct: 353 EAELKARSHKISRNRVVDSYLDSDSEDFDYEKKA---TQVAPKVEPSSGAASSSKPFLRR 409

Query: 181 HFSFGSSKASKSLTENHATKKKGFFWTRSMK 211
           HF FG SK S+SL+EN + +K+G FW R  K
Sbjct: 410 HFPFG-SKWSRSLSENDSARKRG-FWARYRK 438


>29950.m001165 ubiquitin-protein ligase, putative
          Length = 434

 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 71/154 (46%), Gaps = 18/154 (11%)

Query: 41  VDFQTCGICSKLLTEKSLWSSQKLVLSNELSVVAVLTCGHVYHAECLETLTPDINKYDPS 100
           V  Q CG+C KLL +KS WSS +++   ++ +  VL C HV+HAECLE +TP    +DP 
Sbjct: 259 VPDQKCGVCGKLLWQKSPWSSHRIMRGGDMPIAGVLPCSHVFHAECLEQVTPKTQIHDPP 318

Query: 101 CPVC--TLGEKQTHKLSQKAFKAELDLKAKNKRSRNRVVDSDLDGDSV-------MFNRL 151
           CP+C  T+G  +       +    L +  ++ R    VV S+  G          M NRL
Sbjct: 319 CPLCFRTIGAIE----ESASVSEPLQVALRSIRGSRGVVISEAQGSHTHNEASTHMKNRL 374

Query: 152 KGSGHEXXXXXXXXXXXXXXXXXXXFLKRHFSFG 185
           +                         LKRHF+FG
Sbjct: 375 R-----KNWLRAVPQRNYNGSSLTNRLKRHFTFG 403


>29813.m001511 conserved hypothetical protein
          Length = 324

 Score = 76.6 bits (187), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 43/59 (72%)

Query: 46  CGICSKLLTEKSLWSSQKLVLSNELSVVAVLTCGHVYHAECLETLTPDINKYDPSCPVC 104
           CG+C KLL+++S WSSQ++V S ++ V  VL+C HV+HAECLE  +P   K +P CP C
Sbjct: 184 CGLCEKLLSQRSPWSSQRIVRSGDMPVAGVLSCCHVFHAECLEQGSPKEYKSNPPCPKC 242


>27394.m000346 hypothetical protein
          Length = 212

 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/60 (53%), Positives = 37/60 (61%), Gaps = 1/60 (1%)

Query: 46  CGICSKLLTEKSLWSSQKLVLSNELSVVAVLTCGHVYHAECLETLTPDINKYDPSCPVCT 105
           CGIC KLL  KS +    L  S   S+VAVL CGHVYHA+CLE  T      DP CP+C+
Sbjct: 146 CGICQKLLRRKSYFLGDALS-SGGCSIVAVLVCGHVYHADCLEHRTSTEEICDPRCPLCS 204


>30131.m006890 conserved hypothetical protein
          Length = 751

 Score = 46.6 bits (109), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 18/37 (48%), Positives = 24/37 (64%)

Query: 73  VAVLTCGHVYHAECLETLTPDINKYDPSCPVCTLGEK 109
           VAVL CGH +H  CL+ +TP+    DP C  C +G+K
Sbjct: 714 VAVLPCGHHFHDSCLQRITPEDQAQDPPCIPCAIGDK 750