Jatropha Genome Database

JcCB0453091.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0453091.10 + phase: 0 
         (60 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29729.m002354 superoxide dismutase [mn], putative                     120   2e-28
29729.m002353 superoxide dismutase [mn], putative                     111   6e-26
30147.m014368 superoxide dismutase [fe], putative                      49   4e-07
33549.m000044 superoxide dismutase [fe], putative                      49   4e-07

>29729.m002354 superoxide dismutase [mn], putative
          Length = 234

 Score =  120 bits (301), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 55/59 (93%), Positives = 56/59 (94%)

Query: 2   MDPLVTKGPTLVPLLGIDVWEHAYYLQYKNVRPDYLKNIWKVINWKYASEVYANECPSA 60
            DPLVTK PTLVPLLGIDVWEHAYYLQYKNVRPDYLKNIWKV+NWKYASEVYA ECPSA
Sbjct: 176 QDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVRPDYLKNIWKVMNWKYASEVYAKECPSA 234


>29729.m002353 superoxide dismutase [mn], putative
          Length = 239

 Score =  111 bits (278), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 51/58 (87%), Positives = 54/58 (93%)

Query: 2   MDPLVTKGPTLVPLLGIDVWEHAYYLQYKNVRPDYLKNIWKVINWKYASEVYANECPS 59
            DPLVTKGPTLVPLLGIDVWEHAYYLQYKNVRPDYLK+IW V+NWKYASEVY + CPS
Sbjct: 181 QDPLVTKGPTLVPLLGIDVWEHAYYLQYKNVRPDYLKSIWNVMNWKYASEVYESICPS 238


>30147.m014368 superoxide dismutase [fe], putative
          Length = 305

 Score = 49.3 bits (116), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 9/55 (16%)

Query: 5   LVTKGPTLV--------PLLGIDVWEHAYYLQYKNVRPDYLKN-IWKVINWKYAS 50
           +V K P  V        PLL IDVWEHAYYL ++N RPDY+   + K+++W+  S
Sbjct: 203 VVVKSPNAVIPLVWDYYPLLTIDVWEHAYYLDFQNRRPDYISTFLEKLVSWEAVS 257


>33549.m000044 superoxide dismutase [fe], putative
          Length = 244

 Score = 49.3 bits (116), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/37 (51%), Positives = 29/37 (78%)

Query: 14  PLLGIDVWEHAYYLQYKNVRPDYLKNIWKVINWKYAS 50
           P+L +DV+EHAYYL+Y+N R DY+  ++ +INW  A+
Sbjct: 195 PVLILDVFEHAYYLKYQNRRNDYVNQLFSIINWDNAA 231