Jatropha Genome Database

JcCB0450571.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0450571.10 - phase: 2 /partial
         (381 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30169.m006420 transcription factor, putative                          565   e-161
29576.m000226 transcription factor, putative                          227   6e-60
29576.m000233 transcription factor, putative                          224   7e-59
29815.m000502 conserved hypothetical protein                          192   2e-49

>30169.m006420 transcription factor, putative
          Length = 454

 Score =  565 bits (1455), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 282/377 (74%), Positives = 300/377 (79%), Gaps = 2/377 (0%)

Query: 5   AVSPFSATNNGNGSEDDEPSFMEDGNGESSSAAKGKNGSTWQRMKWTDNIVRLLIAIVAC 64
            VS FS TN+GN SEDDEPSF EDGNG++SS AK K GS WQRMKWTDN+VRLLIA+VAC
Sbjct: 79  GVSHFSPTNDGNVSEDDEPSFTEDGNGDNSSGAKSKKGSPWQRMKWTDNVVRLLIAVVAC 138

Query: 65  VGDDGPFEGVEGLKRKSGILQKKGKWKTVSKMMISKGCHVSPQQCEDKFNDLNKRYKRLN 124
           VGDDG F+GVEGLKRKSGILQKKGKWKTVSK++ISKGCHVSPQQ EDKFNDLNKRYKRLN
Sbjct: 139 VGDDGAFDGVEGLKRKSGILQKKGKWKTVSKILISKGCHVSPQQSEDKFNDLNKRYKRLN 198

Query: 125 EILGRGTSCRVVENPALMDSMPLSDKAKDDVRKILSSKHLFYKEMCAYHNGQRIPNCQDL 184
           +ILGRGTSCRVVENPALMDSMPLS KAK+DVRKILSSKHLFYKEMCAYHNGQ IPNCQDL
Sbjct: 199 DILGRGTSCRVVENPALMDSMPLSAKAKEDVRKILSSKHLFYKEMCAYHNGQMIPNCQDL 258

Query: 185 DLQGCLSPLERCSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVRMDKYSERNK 244
           DLQG   PLERCS+                                    RM  Y+ERNK
Sbjct: 259 DLQGFSLPLERCSRDNNGSEEEEAEGHDDSDEDESDNEDDNNAIEEGE--RMGMYAERNK 316

Query: 245 VNEEDARLWSQSGGLIGFEVEMAAIFQDPAVSLWEKKEWIKKQKLQLLEQRVSIQSQAFE 304
           VNEEDA LW QSGG   FEVEMA IFQDP+VSLWEKKEWI KQKLQLLEQRVSIQ+QAFE
Sbjct: 317 VNEEDAHLWPQSGGCNSFEVEMAGIFQDPSVSLWEKKEWINKQKLQLLEQRVSIQAQAFE 376

Query: 305 LEKQRFKWLRYCSKKDREFETSXXXXXXXXXXXXQSILQLRQKQLGMDFRSSETSREPTS 364
           LEKQRFKWLRYCSKKD+EFE              QS+LQLRQKQL MD RSSE+SR+PTS
Sbjct: 377 LEKQRFKWLRYCSKKDKEFEKLRLENERMRLENEQSVLQLRQKQLEMDLRSSESSRDPTS 436

Query: 365 LGIDRLQGRDQIDLGRH 381
           LGIDRLQGRDQIDLGRH
Sbjct: 437 LGIDRLQGRDQIDLGRH 453


>29576.m000226 transcription factor, putative
          Length = 445

 Score =  227 bits (579), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 113/190 (59%), Positives = 140/190 (73%), Gaps = 8/190 (4%)

Query: 9   FSATNNGNG-------SEDDEPSFMEDGNGESSSAAKGKNGSTWQRMKWTDNIVRLLIAI 61
            S TN   G       S++DEPS+ EDG    + A++GK GS W+R+KWTD +VRLLI  
Sbjct: 73  MSLTNYNTGDKGKISTSDEDEPSYSEDGVDGQNEASRGKKGSPWRRVKWTDKMVRLLITA 132

Query: 62  VACVGDDGPFEGVEGLKRKSGILQKKGKWKTVSKMMISKGCHVSPQQCEDKFNDLNKRYK 121
           V+ +G+D   +   G++RK  +LQ+KGKWK VSK M  +G HVSPQQCEDKFNDLNKRYK
Sbjct: 133 VSYIGEDMSSDCNGGIRRKFAVLQRKGKWKLVSKAMAERGFHVSPQQCEDKFNDLNKRYK 192

Query: 122 RLNEILGRGTSCRVVENPALMDSMP-LSDKAKDDVRKILSSKHLFYKEMCAYHNGQRIPN 180
           RLN+ILGRGTSC+VVENPAL+D +  L++KAKDDVRKILSSKHLFY+EMC+YHN  R+  
Sbjct: 193 RLNDILGRGTSCQVVENPALLDVIDFLTEKAKDDVRKILSSKHLFYEEMCSYHNDNRLHL 252

Query: 181 CQDLDLQGCL 190
             D  LQ  L
Sbjct: 253 PHDPALQHSL 262



 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 43/74 (58%)

Query: 280 KKEWIKKQKLQLLEQRVSIQSQAFELEKQRFKWLRYCSKKDREFETSXXXXXXXXXXXXQ 339
           +K+W++   LQL EQ++ IQ +  ELEKQRFKW R+  K+D E E              +
Sbjct: 371 QKQWMESCTLQLEEQKLQIQLEMLELEKQRFKWKRFSRKRDHELEKLRLENERMKLENER 430

Query: 340 SILQLRQKQLGMDF 353
             L+L++K++ +D 
Sbjct: 431 MALELKRKEMVVDL 444


>29576.m000233 transcription factor, putative
          Length = 441

 Score =  224 bits (570), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 107/176 (60%), Positives = 137/176 (77%), Gaps = 1/176 (0%)

Query: 16  NGSEDDEPSFMEDGNGESSSAAKGKNGSTWQRMKWTDNIVRLLIAIVACVGDDGPFEGVE 75
           + S++DEPS+ EDG    +  ++GK GS WQR+KWTD +VRLLI  V+ +G+D   +   
Sbjct: 83  SASDEDEPSYTEDGADGHNDPSRGKKGSPWQRVKWTDKMVRLLITAVSYIGEDVTSDYGS 142

Query: 76  GLKRKSGILQKKGKWKTVSKMMISKGCHVSPQQCEDKFNDLNKRYKRLNEILGRGTSCRV 135
           G++RK  +LQKKGKWK+VSK+M  +G  VSPQQCEDKFNDLNKRYK+LN++LGRGTSC+V
Sbjct: 143 GMRRKFSVLQKKGKWKSVSKVMAERGHLVSPQQCEDKFNDLNKRYKKLNDMLGRGTSCQV 202

Query: 136 VENPALMDSMP-LSDKAKDDVRKILSSKHLFYKEMCAYHNGQRIPNCQDLDLQGCL 190
           VENPAL+D +  L++K KDDVRKILSSKHLFY+EMC+YHNG R+    D  LQ  L
Sbjct: 203 VENPALLDVIDYLTEKEKDDVRKILSSKHLFYEEMCSYHNGNRLHLPHDPALQRSL 258



 Score = 67.8 bits (164), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 53/91 (58%)

Query: 263 EVEMAAIFQDPAVSLWEKKEWIKKQKLQLLEQRVSIQSQAFELEKQRFKWLRYCSKKDRE 322
           EV+M     +   + W +K+W++ + LQL EQ++ IQ +  ELEKQRFKW R+  K+DRE
Sbjct: 350 EVDMNQNSPECTKAAWLQKQWMESRALQLEEQKLQIQIETLELEKQRFKWQRFSRKRDRE 409

Query: 323 FETSXXXXXXXXXXXXQSILQLRQKQLGMDF 353
            E              +  L+L+QK++ +DF
Sbjct: 410 LEKLRMENERMKLENERMALELKQKEISVDF 440


>29815.m000502 conserved hypothetical protein
          Length = 499

 Score =  192 bits (488), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 97/180 (53%), Positives = 131/180 (72%), Gaps = 12/180 (6%)

Query: 3   REAVSPFSATN---NGNGSEDDEPSFMEDGNGESSSAAKGKNGSTWQRMKWTDNIVRLLI 59
           + A +P+S+ N       S++DEP F     G+ S+    +  S WQRMKWTD++VRLLI
Sbjct: 70  KHAYNPYSSLNPKPQSPLSDEDEPGF----TGDDSTGDGKRKVSPWQRMKWTDSMVRLLI 125

Query: 60  AIVACVGDDGPFEG----VEGLKRKSGIL-QKKGKWKTVSKMMISKGCHVSPQQCEDKFN 114
             V  +GD+   EG      G K+  G L QKKGKWK+VS+ M+ KG +VSPQQCEDKFN
Sbjct: 126 MAVFYIGDEAGSEGNNDPSTGKKKAGGGLSQKKGKWKSVSRAMMEKGFYVSPQQCEDKFN 185

Query: 115 DLNKRYKRLNEILGRGTSCRVVENPALMDSMPLSDKAKDDVRKILSSKHLFYKEMCAYHN 174
           DLNKRYKR+N+ILG+GT+C+VVEN +L+++M LS K K++V+K+L+SKHLF++EMCAYHN
Sbjct: 186 DLNKRYKRVNDILGKGTACKVVENQSLLETMDLSPKMKEEVKKLLNSKHLFFREMCAYHN 245



 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/85 (45%), Positives = 55/85 (64%)

Query: 265 EMAAIFQDPAVSLWEKKEWIKKQKLQLLEQRVSIQSQAFELEKQRFKWLRYCSKKDREFE 324
           E+  + QD A S WEKK W+K + +QL EQ++S Q QAFELEKQR KW+++ SKK+RE E
Sbjct: 383 ELMGVIQDGAKSPWEKKHWMKLRSMQLEEQQLSYQCQAFELEKQRLKWVKFSSKKEREME 442

Query: 325 TSXXXXXXXXXXXXQSILQLRQKQL 349
            +            + +L +RQK+L
Sbjct: 443 KAKLDNDRRMLESERMVLLIRQKEL 467