Jatropha Genome Database

JcCB0449991.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0449991.10 + phase: 0 /partial
         (233 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m013905 ubiquitin-protein ligase, putative                       99   2e-21
30169.m006413 ubiquitin-protein ligase, putative                       80   7e-16

>30147.m013905 ubiquitin-protein ligase, putative
          Length = 457

 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/260 (31%), Positives = 114/260 (43%), Gaps = 34/260 (13%)

Query: 1   MIRFDLDKTSANEIDNWLHFALSRRVQRLE----------FNFDSKVIPEVSRCYTLSMA 50
           ++ FDL   S   +D W++FA+S+ ++RLE          F F  +       CY+    
Sbjct: 107 IVSFDLTCNSRRSLDKWMNFAMSKTLKRLEISLAPFSSRKFRFHDECYSFPVDCYSFIRG 166

Query: 51  HAGSSCIKSLTSVSLTNVDVTAEVLEHFLSNCPNXXXXXXXXXXXXXXXKVAGPSPFRLK 110
             G S I SL S+ L  V++T EV+EHFL NCP                KV   S  RLK
Sbjct: 167 PEGLSNISSLRSLCLRYVNMTGEVVEHFLLNCPLLEQLTVAVAYRLESLKVPA-SSLRLK 225

Query: 111 HLEIQYCQDFGQLEICAPNLVYF------GYLGRKMRLHIVH----------APSLIHVY 154
           +LEI  C      EICAPNLV         Y GR+M+L  VH           P L  + 
Sbjct: 226 YLEIFDCYHLKNFEICAPNLVTILYNQGGRYNGRRMKLQAVHLPHLLDLHLGGPEL-SIT 284

Query: 155 LSYYCLDSPTFVXXXXXXXXXXXXXXXXDFSTILQMPNIPELTNLKHLVIGGCADSHD-- 212
             ++   S +F                 +    L+ P  PELTNL+HL   G    +D  
Sbjct: 285 EDFFGACSSSF-SQLMTLKIVVTEVRMQECQVRLKFPKFPELTNLRHL---GFKTEYDIC 340

Query: 213 SLLWIDPLLKACPSLQKLSL 232
           S+L +  L+K+ P L K +L
Sbjct: 341 SILAVRLLIKSSPLLNKFTL 360


>30169.m006413 ubiquitin-protein ligase, putative
          Length = 464

 Score = 80.1 bits (196), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 104/251 (41%), Gaps = 32/251 (12%)

Query: 2   IRFDLDKTSANEIDNWLHFALSRRVQRLEFNFDSKVIPEV--SRCYTLSMAHAGSSCIKS 59
           I FDLD     EID+W+  A+ +RV+RLE +  + + P +  +  Y         S   S
Sbjct: 124 ICFDLDSDFMYEIDSWITIAMQKRVKRLEIDL-TNIEPSIKTTGSYAFPSGLLNDSSFSS 182

Query: 60  LTSVSLTNVDVTAEVLEH-FLSNCPNXXXXXXXXXXXXXXXKVAGPSPFRLKHLEIQYCQ 118
           L ++ L  VDVT E L+H  LS CP                KV+G S  +LK+LE+  C 
Sbjct: 183 LKTLQLNMVDVTGEALQHLLLSWCPLLEVLSIVNSTSLVSLKVSG-SSLKLKYLEMVCCN 241

Query: 119 DFGQLEICAPNLVYFGYLGRKMRLHIVHAPSLIHV---------------YLSYYCLDSP 163
           +   LEI A +LV F Y G  + L     P+L+                   S Y L   
Sbjct: 242 NLKYLEITAASLVSFKYYGPLIGLPFKSVPNLVDASFGGPFCQLTIENLYQFSLYILQLE 301

Query: 164 TFVXXXXXXXXXXXXXXXXDFSTILQMPNIPELTNLKHL-VIGGCADSHDSLLWIDPLLK 222
           T                  +F T     N P L+N+KHL V    +     L     LLK
Sbjct: 302 TL------RFDVGSAYLMREFPT-----NFPILSNVKHLEVTTAVSAVAHCLFPCLSLLK 350

Query: 223 ACPSLQKLSLR 233
            CP L + +L+
Sbjct: 351 GCPLLHRFTLK 361