Jatropha Genome Database

JcCB0447941.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0447941.10 - phase: 0 /partial
         (94 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

27942.m000154 conserved hypothetical protein                          130   2e-31

>27942.m000154 conserved hypothetical protein
          Length = 436

 Score =  130 bits (326), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 59/65 (90%), Positives = 63/65 (96%)

Query: 1   GVTVQESLKEKSIGITEESLLQLKYDPRSVWGYIEVHIEQGPVLEWAGFPLGVVKGIAGQ 60
           GVTVQ+SLKE SIGITEES+LQ+KYDPRSVWGY+EVHIEQGPVLEW GFPLGVVKGIAGQ
Sbjct: 156 GVTVQDSLKENSIGITEESMLQMKYDPRSVWGYVEVHIEQGPVLEWIGFPLGVVKGIAGQ 215

Query: 61  TRLKV 65
           TRLKV
Sbjct: 216 TRLKV 220