Jatropha Genome Database

JcCB0433251.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0433251.20 - phase: 0 
         (122 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29648.m002014 replication factor C / DNA polymerase III gamma-ta...   234   7e-63

>29648.m002014 replication factor C / DNA polymerase III gamma-tau
           subunit, putative
          Length = 360

 Score =  234 bits (597), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 110/122 (90%), Positives = 119/122 (97%)

Query: 1   MQSTHMASEQITEEAVYLCTGNPLPRDIEQISYWLLNESFAETLKRISEIKTKKGLALVD 60
           +QSTHMAS+QITEEAV+LCTGNPLP+DI+QISYWLLNESFAE+ KRISEIKTKKGLALVD
Sbjct: 239 LQSTHMASQQITEEAVHLCTGNPLPKDIQQISYWLLNESFAESFKRISEIKTKKGLALVD 298

Query: 61  IVREVTMFVFKIKMPSDVRVQLINDMADIEYRLSFGCNDKLQLGSLISSFTRARSTLVAA 120
           IVREVTMFVFKIKMPSDVRVQLINDMADIEYRLSFGC+DKLQLGSL++SFT ARS LVAA
Sbjct: 299 IVREVTMFVFKIKMPSDVRVQLINDMADIEYRLSFGCSDKLQLGSLVASFTWARSALVAA 358

Query: 121 AK 122
           AK
Sbjct: 359 AK 360