Jatropha Genome Database

JcCB0433251.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0433251.10 + phase: 0 /partial
         (50 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29648.m002013 ubiquitin-protein ligase, putative                       95   7e-21
29877.m000477 ubiquitin-protein ligase, putative                       49   5e-07

>29648.m002013 ubiquitin-protein ligase, putative
          Length = 2095

 Score = 94.7 bits (234), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 44/50 (88%), Positives = 49/50 (98%)

Query: 1    STLGKVTIQIDKVVTEGVYNGLFSLNHESNKDGSSRTLEIEISWTNRTSE 50
            STLG+VTIQIDKVVTEGVY+GLFSLNH++NKDGSSRTLEIEI WTNRT+E
Sbjct: 2046 STLGRVTIQIDKVVTEGVYSGLFSLNHDNNKDGSSRTLEIEIIWTNRTAE 2095


>29877.m000477 ubiquitin-protein ligase, putative
          Length = 2098

 Score = 48.9 bits (115), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/47 (55%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 1    STLGKVTIQIDKVVTEGVYNGLFSLNHESNKDGSSRTLEIEISWTNR 47
            S+ GKVTIQID+VV  G   G ++L  ES K G SR LEIE  W+N+
Sbjct: 2053 SSFGKVTIQIDRVVMLGAVAGEYTLLPES-KTGPSRILEIEFQWSNK 2098