Jatropha Genome Database

JcCB0432331.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0432331.10 + phase: 0 /partial
         (110 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29883.m001987 trytophan synthase alpha subunit, putative              151   8e-38

>29883.m001987 trytophan synthase alpha subunit, putative
          Length = 313

 Score =  151 bits (381), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 81/105 (77%), Positives = 87/105 (82%), Gaps = 14/105 (13%)

Query: 20  RMKAIVKASEGFVYLVSSVGVTGARAS--------------ETTKPVAVGFGISKPEHVK 65
           RMKAIV+A+EGFVYLVSSVGVTGARAS               T KPVAVGFGISKPEHVK
Sbjct: 209 RMKAIVEAAEGFVYLVSSVGVTGARASVSDRVQTLLQEIKEATAKPVAVGFGISKPEHVK 268

Query: 66  QVAGWGADGVIVGSAIVKVLGDAKSPEEGLKELENLTKSLKSALL 110
           QVAGWGADGVIVGSA+VKVLG+AKSPEEGL+EL  LTKSLKSAL+
Sbjct: 269 QVAGWGADGVIVGSAMVKVLGEAKSPEEGLEELATLTKSLKSALV 313