Jatropha Genome Database

JcCB0432051.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0432051.10 - phase: 0 /partial
         (170 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30009.m000840 U3 small nucleolar RNA-interacting protein, putative    107   2e-24

>30009.m000840 U3 small nucleolar RNA-interacting protein, putative
          Length = 572

 Score =  107 bits (268), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/150 (48%), Positives = 83/150 (55%), Gaps = 3/150 (2%)

Query: 24  EDPFFSKESKKRRKMDYNDDYIESGESEEENGFLSGGXXXXXXXXXXXXXXXXX--TADE 81
           +DPFF+ ESKKRRK +Y DDYIESG  E +    +                     TA E
Sbjct: 18  QDPFFNTESKKRRKNEYRDDYIESGGEESDEENNNNNNNNGFSNSGDEKEREDEKETAQE 77

Query: 82  KRQRVAKAYVXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXSRVLKKLMQAQLEESGRLR 140
           KRQR+AKAY+                               S V+  L++ QLE+SGRLR
Sbjct: 78  KRQRLAKAYLEKRREILRREEEEAEEEGEDNGRCEKEGERDSLVVNMLLKEQLEDSGRLR 137

Query: 141 RAIASRVEKPETVGGFEVLVKHRHSVTAVC 170
           RAIASRVEKPETVGGFEVLVKHRHSVTAVC
Sbjct: 138 RAIASRVEKPETVGGFEVLVKHRHSVTAVC 167