Jatropha Genome Database

JcCB0430801.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0430801.10 + phase: 2 /pseudo/partial
         (195 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29999.m000208 DNA binding protein, putative                           265   7e-72
29589.m001275 protein binding protein, putative                       145   1e-35
30078.m002221 DNA binding protein, putative                           139   7e-34
29844.m003292 hypothetical protein                                    101   2e-22
29647.m002062 conserved hypothetical protein                           77   5e-15
30150.m000485 DNA binding protein, putative                            70   9e-13
29840.m000626 chromodomain helicase DNA binding protein, putative      61   3e-10
29624.m000323 conserved hypothetical protein                           60   9e-10
29992.m001424 hypothetical protein                                     57   4e-09
30169.m006272 conserved hypothetical protein                           54   5e-08

>29999.m000208 DNA binding protein, putative
          Length = 856

 Score =  265 bits (678), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 131/197 (66%), Positives = 142/197 (72%), Gaps = 3/197 (1%)

Query: 2   HLYLFCRAGVFMQQKKTNEGGTXXXXXXXXXFTFHAKWSSRWCXIGLLCQ---RTSGYKQ 58
           H   F R       KKTNEGGT           F          +    +     +GYKQ
Sbjct: 392 HKRAFRRPSSLSHPKKTNEGGTRRRDNDLHRLLFMPNGLPDGAELAYYIKGQKMLAGYKQ 451

Query: 59  GNGIVCSCCDREISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIAISLANGQNVTSGVS 118
           GNGIVCSCCDREISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIA SLANGQN+T+G+S
Sbjct: 452 GNGIVCSCCDREISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIATSLANGQNLTTGLS 511

Query: 119 DDMCAKCGDGGGLIFCESCPRAFHLECLDLQCVPKGVWQCPSCIKSGHGGNFTRPIIIRL 178
           DDMCA+CGDGG LIFCESCPRAFHL CL L+ VP  VW CP+C K GHGGNF+R I+IRL
Sbjct: 512 DDMCAECGDGGDLIFCESCPRAFHLVCLGLKYVPSDVWHCPNCNKFGHGGNFSRSIVIRL 571

Query: 179 TRVVKMPEYEVGGCAVC 195
           TRVVK PEYEVGGC  C
Sbjct: 572 TRVVKTPEYEVGGCVFC 588


>29589.m001275 protein binding protein, putative
          Length = 1042

 Score =  145 bits (366), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 71/159 (44%), Positives = 96/159 (60%), Gaps = 18/159 (11%)

Query: 55  GYKQGNGIVCSCCDREISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIAISLANGQNVT 114
           GYK+G GI CSCC+ E+SPSQFEAHAG A+RR+PY HIYTSNG++LH++AISL+  +  +
Sbjct: 604 GYKKGFGIFCSCCNTEVSPSQFEAHAGWASRRKPYLHIYTSNGVSLHELAISLSKSRKFS 663

Query: 115 SGVSDDMCAKCGDGGGLIFCESCPRAFHLECLDLQCVPKGVWQCPSCIKSGHGGNFTR-- 172
           +  +DD+C  C DGG L+ C+ CPRA+H +CL L  +P G W C  C+ +     F    
Sbjct: 664 THQNDDLCQICRDGGDLLCCDVCPRAYHKDCLALPEIPTGRWYCKFCLNNFQKEKFVEHN 723

Query: 173 ----------------PIIIRLTRVVKMPEYEVGGCAVC 195
                            I  R  R+VK  + + GGC  C
Sbjct: 724 ANAIAAGRVAGVDPIDQITRRCIRIVKTMDADFGGCVFC 762


>30078.m002221 DNA binding protein, putative
          Length = 855

 Score =  139 bits (351), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 71/159 (44%), Positives = 97/159 (61%), Gaps = 18/159 (11%)

Query: 55  GYKQGNGIVCSCCDREISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIAISLANGQNVT 114
           GYK+G GI+C CC+ E+SPS FEAHAG A R++PY +IYTSNG++LH++AISL+ G+  +
Sbjct: 418 GYKRGFGILCCCCNCEVSPSTFEAHAGWATRKKPYAYIYTSNGVSLHELAISLSKGRKYS 477

Query: 115 SGVSDDMCAKCGDGGGLIFCESCPRAFHLECLDLQCVPKGVWQCPSC------------- 161
           +  +DD+C  C DGG LI C+ CPRAFH  C  L  +P+G W C  C             
Sbjct: 478 ARDNDDLCIVCADGGSLILCDGCPRAFHKGCASLSSIPRGKWFCQFCQNMFQREKFVEHN 537

Query: 162 ---IKSGH--GGNFTRPIIIRLTRVVKMPEYEVGGCAVC 195
              + +G   G +    I  R  R+VK  E E+ GC +C
Sbjct: 538 ANAVAAGRISGVDPIEQITQRCIRIVKNIEAELTGCVLC 576


>29844.m003292 hypothetical protein
          Length = 1604

 Score =  101 bits (252), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 46/119 (38%), Positives = 66/119 (55%), Gaps = 13/119 (10%)

Query: 55  GYKQGNGIVCSCCDREISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIAISLANGQNVT 114
           G+   +GI C CC + ++ S+FE HAG +  RQP+++IY  +G++L +  I   N Q   
Sbjct: 686 GWVTRDGIHCGCCSKILTVSKFEIHAG-SKLRQPFQNIYLDSGVSLLECQIDAWNRQESI 744

Query: 115 SGV------------SDDMCAKCGDGGGLIFCESCPRAFHLECLDLQCVPKGVWQCPSC 161
             +            +DD C  CGDGG LI C+ CP  FH  CLD+  +P G W CP+C
Sbjct: 745 ERIGFHSVNTDGDDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIMMLPPGDWHCPNC 803


>29647.m002062 conserved hypothetical protein
          Length = 1700

 Score = 77.0 bits (188), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 63/122 (51%), Gaps = 13/122 (10%)

Query: 53  TSGYKQGNGIVCSCCDREISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIAISLANGQN 112
           T G    +GI C CC++  + ++FEAHAG     QP+ +IY   G +L    +     ++
Sbjct: 792 TKGSITTDGIQCDCCNKTFTSAEFEAHAG-GKSCQPFENIYLETGSSLLQCQLDSWYKED 850

Query: 113 VTS------------GVSDDMCAKCGDGGGLIFCESCPRAFHLECLDLQCVPKGVWQCPS 160
            ++              +DD C  CGDGG LI C+SCP  FH  CL+++  P G+W C  
Sbjct: 851 DSAHKGFHFIDIDGEDPNDDTCGICGDGGDLICCDSCPSTFHQSCLEIRKFPSGLWHCMY 910

Query: 161 CI 162
           C+
Sbjct: 911 CL 912


>30150.m000485 DNA binding protein, putative
          Length = 1336

 Score = 69.7 bits (169), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 60/121 (49%), Gaps = 14/121 (11%)

Query: 54  SGYKQGNGIVCSCCDREISPSQFEAHAGMAARRQPYRHIYTSNG--LTLHDIAISLANGQ 111
            G  +  GI+C CC+  +S + F+ HAG    R P  +++  +G   TL  +    A  +
Sbjct: 789 DGLIKKEGIMCKCCNMVLSVTNFKNHAGFKQSR-PCLNVFMKSGKPFTLCQLQAWSAEYK 847

Query: 112 NVTSGV-----------SDDMCAKCGDGGGLIFCESCPRAFHLECLDLQCVPKGVWQCPS 160
              S             +DD C  CGDGG LI C++CP  FH  CL  + +P+G W CP+
Sbjct: 848 TRKSRTIKVVRTADDDENDDSCGLCGDGGELICCDNCPSTFHQACLSTEELPEGSWYCPN 907

Query: 161 C 161
           C
Sbjct: 908 C 908


>29840.m000626 chromodomain helicase DNA binding protein, putative
          Length = 2257

 Score = 61.2 bits (147), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/42 (54%), Positives = 29/42 (69%), Gaps = 2/42 (4%)

Query: 122 CAKCGDGGGLIFCESCPRAFHLECLD--LQCVPKGVWQCPSC 161
           C  C  GG L+ C+SCPR +HL+CLD  L+ +P G WQCP C
Sbjct: 78  CVICDLGGNLLCCDSCPRVYHLQCLDPPLKRIPMGKWQCPKC 119


>29624.m000323 conserved hypothetical protein
          Length = 853

 Score = 59.7 bits (143), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 56/125 (44%), Gaps = 17/125 (13%)

Query: 54  SGYKQGNGIVCSCCDREISPSQFEAHAGMAARRQP---YRHIYTSNGLTLHDIAISLANG 110
            G   G+GI C+CC +  +   F+ HA     R     + +I+  +G +L D  + + + 
Sbjct: 348 EGRISGSGIKCNCCGKVYTLCGFDYHASGKQGRTATSIFSNIFLEDGRSLLDCQMQIMHD 407

Query: 111 QNVTSGV--------------SDDMCAKCGDGGGLIFCESCPRAFHLECLDLQCVPKGVW 156
                G               +D +C+ C  GG LI C+ CP +FH  CL L  VP G W
Sbjct: 408 HTKNLGEEPLERWQSSKDQVENDHICSVCHYGGELILCDQCPSSFHKSCLGLMDVPDGDW 467

Query: 157 QCPSC 161
            C SC
Sbjct: 468 FCSSC 472


>29992.m001424 hypothetical protein
          Length = 499

 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 31/48 (64%)

Query: 114 TSGVSDDMCAKCGDGGGLIFCESCPRAFHLECLDLQCVPKGVWQCPSC 161
            S +SD +C+ C  GG LI C+ CP  FHL CL+L+ VP   W CPSC
Sbjct: 138 NSSLSDTICSFCHYGGDLILCDKCPSTFHLGCLELKDVPLENWFCPSC 185


>30169.m006272 conserved hypothetical protein
          Length = 602

 Score = 53.9 bits (128), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 2/46 (4%)

Query: 122 CAKCGDGGGLIFCESCPRAFHLECLD--LQCVPKGVWQCPSCIKSG 165
           C  C +GG L+ C++CP  +HL+CL   L+ VP G WQC +C ++ 
Sbjct: 64  CVICDNGGDLLCCDTCPGTYHLQCLTPPLELVPSGNWQCENCCQAA 109