Jatropha Genome Database

JcCB0430531.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0430531.10 - phase: 0 /pseudo/partial
         (155 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30138.m003913 Transcription factor BIM1, putative                     202   4e-53
29790.m000843 Transcription factor BIM1, putative                     108   7e-25
30138.m003899 conserved hypothetical protein                          102   9e-23

>30138.m003913 Transcription factor BIM1, putative
          Length = 567

 Score =  202 bits (515), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 103/155 (66%), Positives = 117/155 (75%), Gaps = 11/155 (7%)

Query: 1   MIKSAKGSTQDDNLDDEEEFVLKKESSSPVHKGELRVKVDGKSTDQKANTPRSKHSATEQ 60
           MIKSAK S+QDD LD+EEEFVLKKE+ SP+ KGELRVKVDGKSTDQKANTPRSKHSATEQ
Sbjct: 214 MIKSAKDSSQDDKLDEEEEFVLKKETPSPIRKGELRVKVDGKSTDQKANTPRSKHSATEQ 273

Query: 61  RRRSKINDSLLEVKEXXXXXXXXXXEYNYSVISECWRHLHILQVIEYIQFLQEKVQKYEG 120
           RRRSKIND    ++E          + ++           +L+VIEYIQFL EKV KYEG
Sbjct: 274 RRRSKINDRFQMLRELIPHGDQKRDKASF-----------LLEVIEYIQFLHEKVHKYEG 322

Query: 121 SYQGWNHEPAKLVPWRNGNRPTESYADQSQGINGG 155
           SYQ WN+EPAKLVPWRNG+R  ESY DQS+G N G
Sbjct: 323 SYQRWNNEPAKLVPWRNGSRSVESYVDQSRGSNSG 357


>29790.m000843 Transcription factor BIM1, putative
          Length = 311

 Score =  108 bits (271), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 58/125 (46%), Positives = 77/125 (61%), Gaps = 12/125 (9%)

Query: 31  HKGELRVKVDGKSTDQKANTPRSKHSATEQRRRSKINDSLLEVKEXXXXXXXXXXEYNYS 90
           ++GE+  K DGKS++QKANT RSKHS TEQRRRSKIN+    +++          + ++ 
Sbjct: 23  YRGEIG-KGDGKSSEQKANTHRSKHSETEQRRRSKINERFQILRDLIPQNDQKRDKASF- 80

Query: 91  VISECWRHLHILQVIEYIQFLQEKVQKYEGSYQGWNHEPAKLVPWRNGNRPTESYADQSQ 150
                     +L+VIEYIQFLQEK+  YEG +QGW  EP KL PW+N +   ES  D SQ
Sbjct: 81  ----------LLEVIEYIQFLQEKLHMYEGPFQGWTQEPTKLTPWKNHHTSVESLVDHSQ 130

Query: 151 GINGG 155
            +  G
Sbjct: 131 VLKNG 135


>30138.m003899 conserved hypothetical protein
          Length = 348

 Score =  102 bits (253), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 55/116 (47%), Positives = 72/116 (62%), Gaps = 12/116 (10%)

Query: 40  DGKSTDQKANTPRSKHSATEQRRRSKINDSLLEVKEXXXXXXXXXXEYNYSVISECWRHL 99
           DGK++D KAN  RSKHS TEQRRRSKIN+    +++            ++          
Sbjct: 42  DGKNSD-KANAIRSKHSVTEQRRRSKINERFQILRDLIPHSDQKRDTASF---------- 90

Query: 100 HILQVIEYIQFLQEKVQKYEGSYQGWNHEPAKLVPWRNGNRPTESYADQSQGINGG 155
            +L+VIEY+Q+LQEKVQKYEGSYQGW+ EP KL+PWRN +   +S+    Q I  G
Sbjct: 91  -LLEVIEYVQYLQEKVQKYEGSYQGWSSEPTKLMPWRNSHWRVQSFIGHPQPIKNG 145