Jatropha Genome Database

JcCB0430471.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0430471.20 - phase: 0 
         (101 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28179.m000478 DNA binding protein, putative                            97   1e-21
29804.m001498 DNA binding protein, putative                            93   3e-20
28179.m000479 DNA binding protein, putative                            46   4e-06

>28179.m000478 DNA binding protein, putative
          Length = 331

 Score = 97.1 bits (240), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 49/108 (45%), Positives = 70/108 (64%), Gaps = 7/108 (6%)

Query: 1   MLEEQAKKKIVESALLVNRPQ-------PSVDEKFDNNLNHPLPEIEAKVLDQSVLVRIH 53
           MLE+Q KK+ +ES +L+ + Q        S D+  D   +  LPEIEA+V D+ VL RIH
Sbjct: 206 MLEDQTKKRTMESIILIKKSQLSADDESSSCDDNSDGCSDSALPEIEARVSDKDVLFRIH 265

Query: 54  CEKNKGNLAKVLHELEKLPLIVVATNILPFGSCTMDLTVIGQVWSMNS 101
           CEK +G + K+LHE+E L L ++   +LPFGS T+D+T+I Q+   NS
Sbjct: 266 CEKQQGVVPKILHEVENLHLSIINNTVLPFGSSTLDITIIAQMDENNS 313


>29804.m001498 DNA binding protein, putative
          Length = 309

 Score = 92.8 bits (229), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 48/104 (46%), Positives = 67/104 (64%), Gaps = 9/104 (8%)

Query: 2   LEEQAKKKIVESALLVNRPQ--------PSVDEKFDNN-LNHPLPEIEAKVLDQSVLVRI 52
           LEEQ KKK +ES ++V + +         S DE F     + PLPEIEA++ D+ VL+RI
Sbjct: 183 LEEQTKKKTMESVVIVKKSRLVFGEEDTSSSDESFSKGPFDEPLPEIEARICDKHVLIRI 242

Query: 53  HCEKNKGNLAKVLHELEKLPLIVVATNILPFGSCTMDLTVIGQV 96
           HCEK KG L K + E+EKL L V  +++L FGS  +D+T+I Q+
Sbjct: 243 HCEKRKGVLEKTIAEIEKLHLSVTNSSVLTFGSSALDVTIIAQM 286


>28179.m000479 DNA binding protein, putative
          Length = 299

 Score = 45.8 bits (107), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 31/49 (63%), Gaps = 7/49 (14%)

Query: 2   LEEQAKKKIVESALLVNRPQ-------PSVDEKFDNNLNHPLPEIEAKV 43
           LEEQA KK +ES + V + Q        S+DE F  + +HPLPEIEA+V
Sbjct: 230 LEEQAAKKTMESVVFVKKSQVYADDDSSSIDENFVGSCDHPLPEIEARV 278