Jatropha Genome Database

JcCB0430471.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0430471.10 + phase: 1 /partial
         (193 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30169.m006369 conserved hypothetical protein                          238   2e-63

>30169.m006369 conserved hypothetical protein
          Length = 1016

 Score =  238 bits (606), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 117/154 (75%), Positives = 128/154 (83%)

Query: 40   LRALFQSGMLESDSETIKVPVSWEAMTKFVNWCYTDELPSPPSGCLWDNMDTEERLSVLQ 99
            LRA+FQSGM ES+S+TIKVPVSWEAM K VNW YTDE PSPPSGCLWDNMDTEERL+VLQ
Sbjct: 863  LRAMFQSGMAESNSQTIKVPVSWEAMVKLVNWWYTDEFPSPPSGCLWDNMDTEERLNVLQ 922

Query: 100  PYXXXXXXXXXXXXXDVQDISYRVIISYLDSARHLSIKIIKIAADLSLWKLVEVAAIYLA 159
            PY              VQD+SYR+I+S L+SARHLSIK+IK A D SLWKLVEVAA YLA
Sbjct: 923  PYVELCWLAEFWFLEYVQDVSYRIIVSCLESARHLSIKMIKTAIDFSLWKLVEVAANYLA 982

Query: 160  PLYRQLCHSGDLEALDEEVVDMIRAASVRLSQEG 193
            P YRQLC+SGDLE LDEEV+DMIRAASVRLSQEG
Sbjct: 983  PQYRQLCNSGDLEGLDEEVIDMIRAASVRLSQEG 1016