Jatropha Genome Database

JcCB0430181.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0430181.10 - phase: 0 /partial
         (317 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30099.m001632 conserved hypothetical protein                          448   e-126

>30099.m001632 conserved hypothetical protein
          Length = 694

 Score =  448 bits (1153), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 223/274 (81%), Positives = 247/274 (90%), Gaps = 5/274 (1%)

Query: 1   MDDTESVQINAEEAEINGDEFYEKIEAPKFVDLNAPDPYHHGDDCYWFCMRVGCDQKHEE 60
           MD+TE++Q+ +EE EI GD+FYEKIEAPKFVDL APDPYHHGDD YWFC RVGCDQKHEE
Sbjct: 1   MDETETLQMYSEEEEI-GDDFYEKIEAPKFVDLKAPDPYHHGDDRYWFCSRVGCDQKHEE 59

Query: 61  EMDSETIYKNFLLRVMAARSPNIRLRKALHKKDS-STDLKCPRTVPAKPSKPRVSRLALI 119
           +MDSETIYKNF+LRVMAARSPNIRLRKAL++KD+ S++ KCPRTVPAKPSKPRV+RLALI
Sbjct: 60  DMDSETIYKNFVLRVMAARSPNIRLRKALYRKDACSSETKCPRTVPAKPSKPRVTRLALI 119

Query: 120 SSISKRIVDPKVKVKPLSKQNATPNAKAKQQPSIIAKALTTPRAKKQLSNPEAFRSVRNP 179
           SSISKRIVDPKVKVKP+SKQNA  NAKAKQ PS+IAKALTTPR KKQLSN +AFRSVRNP
Sbjct: 120 SSISKRIVDPKVKVKPISKQNAMLNAKAKQ-PSVIAKALTTPRTKKQLSNLDAFRSVRNP 178

Query: 180 KTTATAMPKNRVVAKTLVFDSPKKSVRTKSSLELNTPVKTLCAGMKKLEITSAKKQVLGY 239
           KTTATAM KNR+VAK LVF SPKKSV+TKSS+EL TPVKTLC GMKKLEIT AKKQ LG 
Sbjct: 179 KTTATAMSKNRLVAKALVFHSPKKSVKTKSSIELKTPVKTLCDGMKKLEITGAKKQRLGP 238

Query: 240 DRPLPCDTAASRKKLRGREVKSRLFDGLNLQKHK 273
           ++PLP DT  SRK+LRGREVKSR+FDGL  Q HK
Sbjct: 239 NKPLPSDT--SRKQLRGREVKSRVFDGLLSQNHK 270