Jatropha Genome Database

JcCB0429541.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0429541.10 + phase: 0 /partial
         (298 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29842.m003591 conserved hypothetical protein                          446   e-126

>29842.m003591 conserved hypothetical protein
          Length = 1399

 Score =  446 bits (1146), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 211/298 (70%), Positives = 243/298 (81%)

Query: 1   VASQVQELIFEMIHKREEVRACRSVPYPCICFRPPYMCPSVTDEIQNFNPTQCTESSPTP 60
           +ASQVQ LI EM+HKR+EV   RSVPYP ICF P YMCPSV DE  N +P QC ESS  P
Sbjct: 356 IASQVQGLISEMLHKRDEVITSRSVPYPGICFHPLYMCPSVMDEFPNLSPQQCIESSSAP 415

Query: 61  STQMFVSQNISTTRGSNDASFDGQINSSQTAAYFWVPFVNGPIISILDAAPLNLVGRYME 120
           + Q+ ++Q+I TT G N+    G+IN+SQTA  FWVPF++GP+ISILD APLNLV RYM+
Sbjct: 416 NMQILITQDIPTTTGRNNNDSSGRINASQTAGSFWVPFMSGPLISILDVAPLNLVERYMD 475

Query: 121 EVFNAVREYRQRHLDSSCDTWNEREPLFHLPHFPSLTESNSEVSKRNTPPAISTGPTMPG 180
           +VFNAVREYRQRHLDSSCD WNEREPLF LP FPS+ E+N EVSK NTPPA+S+ P+ PG
Sbjct: 476 DVFNAVREYRQRHLDSSCDAWNEREPLFQLPRFPSVAEANGEVSKGNTPPAVSSVPSTPG 535

Query: 181 QQLPKKTLAASIVENAKKQSVALVPKDISMLAQRFSSLFNPALFPHKPPPAAVANRVLFT 240
           QQ PKKTLAASIVEN KKQSVALVPKDIS LAQRF  LFNPALFPHKPPPAAV+NR+LFT
Sbjct: 536 QQPPKKTLAASIVENVKKQSVALVPKDISKLAQRFLQLFNPALFPHKPPPAAVSNRILFT 595

Query: 241 DSEDELLALGIMEYNTDWKAIQQRFLPCKSKHQVVHIRVHNANTQPPLTSVKGDRRRK 298
           DSEDELLALG+MEYNTDWKAIQQRFLPCKSKHQ+   + +  +++ P   +K  RR K
Sbjct: 596 DSEDELLALGMMEYNTDWKAIQQRFLPCKSKHQIFVRQKNRCSSKAPENPIKAVRRMK 653