Jatropha Genome Database

JcCB0429441.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0429441.10 + phase: 0 
         (73 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29648.m002000 replication factor C / DNA polymerase III gamma-ta...   135   6e-33
29648.m002014 replication factor C / DNA polymerase III gamma-ta...    77   2e-15
30072.m000942 replication factor C / DNA polymerase III gamma-ta...    70   3e-13
30190.m011152 replication factor C / DNA polymerase III gamma-ta...    68   1e-12
57404.m000025 werner helicase interacting protein, putative            51   1e-07

>29648.m002000 replication factor C / DNA polymerase III gamma-tau
          subunit, putative
          Length = 342

 Score =  135 bits (339), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 60/68 (88%), Positives = 65/68 (95%)

Query: 1  MAPVLPNSQPWVEKYRPKQVKDVAHQEEVVRVLTNTIETGDCPHMLFYGPPGTGKTTSAL 60
          MAP+L +SQPWVEKYRPKQVKDVAHQEEVVRVLTNT+ET +CPHMLFYGPPGTGKTT+AL
Sbjct: 1  MAPILQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETSNCPHMLFYGPPGTGKTTTAL 60

Query: 61 AIARQLFG 68
          AIA QLFG
Sbjct: 61 AIAHQLFG 68


>29648.m002014 replication factor C / DNA polymerase III gamma-tau
          subunit, putative
          Length = 360

 Score = 76.6 bits (187), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 42/61 (68%)

Query: 8  SQPWVEKYRPKQVKDVAHQEEVVRVLTNTIETGDCPHMLFYGPPGTGKTTSALAIARQLF 67
          + PWVEKYRP+ + DVA   ++V  +         PH+L YGPPGTGKT++ LA+AR+L+
Sbjct: 36 ATPWVEKYRPQSLADVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLY 95

Query: 68 G 68
          G
Sbjct: 96 G 96


>30072.m000942 replication factor C / DNA polymerase III gamma-tau
          subunit, putative
          Length = 342

 Score = 69.7 bits (169), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 39/58 (67%)

Query: 11 WVEKYRPKQVKDVAHQEEVVRVLTNTIETGDCPHMLFYGPPGTGKTTSALAIARQLFG 68
          WV+KYRPK +  +   E++ + L   +   DCPH+LFYGP G+GK T  +A+ RQ+FG
Sbjct: 3  WVDKYRPKTLDQIMVHEDIAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQIFG 60


>30190.m011152 replication factor C / DNA polymerase III gamma-tau
          subunit, putative
          Length = 333

 Score = 67.8 bits (164), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 39/59 (66%)

Query: 10 PWVEKYRPKQVKDVAHQEEVVRVLTNTIETGDCPHMLFYGPPGTGKTTSALAIARQLFG 68
          PWVEKYRP ++ D+   E+ V  L      G+ P+++  GPPGTGKTTS LA+A +L G
Sbjct: 16 PWVEKYRPSKICDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLG 74


>57404.m000025 werner helicase interacting protein, putative
          Length = 109

 Score = 50.8 bits (120), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 3/74 (4%)

Query: 3  PVLPNSQPWVEKYRPKQVKDVAHQEEVV---RVLTNTIETGDCPHMLFYGPPGTGKTTSA 59
          P  P+S P  E+ RPK + +V  Q  ++   + L    E+G  P M+ +GPPG GKTT A
Sbjct: 7  PQTPSSVPLAEQLRPKTLDEVVGQTHLLGESKPLRRAFESGKLPSMILWGPPGVGKTTLA 66

Query: 60 LAIARQLFGYFLIL 73
            IA+     F+ L
Sbjct: 67 RLIAQTADAEFVPL 80