Jatropha Genome Database

JcCB0428011.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0428011.10 + phase: 1 /partial
         (229 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29703.m001491 nucleolar protein nop56, putative                       179   7e-46
29844.m003250 Vicilin GC72-A precursor, putative                      114   3e-26

>29703.m001491 nucleolar protein nop56, putative
          Length = 560

 Score =  179 bits (455), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 94/177 (53%), Positives = 125/177 (70%), Gaps = 23/177 (12%)

Query: 1   ISMIIEE-KRQSFNVQRGDVLRIRAGTPLYLINRDEKEKLYVVSVMVPVNIPGEFEIFSA 59
           +++I EE +++SFN++ GDV+R+RAGTP+Y+INRD+ EKLY+++ + PVN+PGEFE F A
Sbjct: 239 VTLIHEEGEKRSFNIEVGDVMRVRAGTPVYVINRDDNEKLYIINFIQPVNLPGEFEAFRA 298

Query: 60  SGTEDSESFYEAFSWELLEAA-------------------LKPPGEQIQAMSHR-EEGGG 99
           +G  + ESFY AFSWELLEAA                   +K   EQIQAM+HR +EGG 
Sbjct: 299 AGGREDESFYNAFSWELLEAAFKTDRRRIEQLITQKQEAIVKASKEQIQAMTHRDQEGGT 358

Query: 100 VWPFGTESIG-PISIL-KNPVFRNNYGQLFEVGSRDFKQQLRDLDLSVSVANISRAS 154
           +WPFG ES G P ++L K PV  NN+GQLFE    D K+QL+DLDL +S ANI+R S
Sbjct: 359 IWPFGGESSGAPFNLLHKRPVQSNNHGQLFEARPNDHKEQLQDLDLMISFANITRGS 415



 Score =  102 bits (254), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 48/77 (62%), Positives = 60/77 (77%)

Query: 153 ASRNNNLEVVCFEINEEGNTRHLLAGKNNIVNKMEKQAKELAFGVSEREVDQAFGRQNEE 212
           AS NNNL V+CFE+N +GN R+ LAG+NNIV + E++AKELAFGV  REVD+ F  QNE 
Sbjct: 484 ASPNNNLAVLCFEVNAQGNIRYTLAGRNNIVRRWEREAKELAFGVRAREVDEVFESQNEV 543

Query: 213 WFFPGPRRGSFEGHAVA 229
           +FFPGPRR  ++G A A
Sbjct: 544 FFFPGPRRQEWQGRASA 560


>29844.m003250 Vicilin GC72-A precursor, putative
          Length = 613

 Score =  114 bits (285), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 66/170 (38%), Positives = 99/170 (58%), Gaps = 17/170 (10%)

Query: 1   ISMIIEEKRQSFNVQRGDVLRIRAGTPLYLINRDEKEKLYVVSVMVPVNIPGEFEIFSAS 60
           IS ++ EKR S+N++ GDV++I AG  +Y+ N D  E L + +++ PVNIPGEF  FSA+
Sbjct: 277 ISYVLREKRVSYNLETGDVIKIPAGATVYMSNHDNNEMLRLATLIQPVNIPGEFSSFSAA 336

Query: 61  GTEDSESFYEAFSWELLEAALKPPGEQIQAMSHREEGGGVWPFGTESIGPISI------- 113
           G  + ESFY  FS ++LEAAL  P +Q+  +  ++  G +     + +  +S        
Sbjct: 337 GGGNLESFYTVFSNDVLEAALDTPRDQLDKLFGQQRQGVIVKAPQKQLKALSQRVSSTRQ 396

Query: 114 -------LKN--PVFRNNYGQLFEVGSRDFKQQLRDLDLSVSVANISRAS 154
                  L+N  P++ N YG L+E    D K QL+D+D+SVS A I R S
Sbjct: 397 KGQAPLNLRNQQPLYSNRYGNLWEASPNDHK-QLQDMDVSVSYAEIKRGS 445



 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 1/67 (1%)

Query: 153 ASRNNNLEVVCFEINEEGNTRHLLAG-KNNIVNKMEKQAKELAFGVSEREVDQAFGRQNE 211
           AS+N NL  + F IN   N R+ LAG ++N++N++E +AKEL+F V    +++ F  Q E
Sbjct: 521 ASQNENLLTLWFGINASNNHRNFLAGQRDNVMNQIEIEAKELSFNVPAELIEKIFRNQKE 580

Query: 212 EWFFPGP 218
             F  GP
Sbjct: 581 SHFVAGP 587