Jatropha Genome Database

JcCB0427111.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0427111.20 - phase: 0 
         (54 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29822.m003358 26 proteasome complex subunit DSS1, putative             49   7e-07

>29822.m003358 26 proteasome complex subunit DSS1, putative
          Length = 73

 Score = 48.5 bits (114), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 24/43 (55%), Positives = 30/43 (69%)

Query: 12 EWEDKEEGKEVTQQWEXXXXXXXXXXXFSLQLRRELEKSTEKN 54
          EW+DKEEGKE+ QQWE           FSLQLR+ELE ++EK+
Sbjct: 31 EWDDKEEGKEIAQQWEDDWDDDDVNDDFSLQLRKELENNSEKS 73