Jatropha Genome Database

JcCB0426111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0426111.10 - phase: 0 /partial
         (118 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29719.m000333 4-alpha-glucanotransferase, chloroplast precursor,...   213   2e-56

>29719.m000333 4-alpha-glucanotransferase, chloroplast precursor,
           putative
          Length = 584

 Score =  213 bits (542), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 101/118 (85%), Positives = 110/118 (93%)

Query: 1   AGPGKSLFDAISGAFGNIRIIAEDLGVITEDVVQLRKSIGAPGMAVLQFGFGSDADNPHL 60
           AGPGKSLFDAI+ A G I IIAEDLGVITEDVVQLRKSIGAPGMAVLQFGFGSDADNPHL
Sbjct: 401 AGPGKSLFDAITRAVGKISIIAEDLGVITEDVVQLRKSIGAPGMAVLQFGFGSDADNPHL 460

Query: 61  PHNHEANQVVYTGTHDNDTTRGWWDNLKKREKSNVLKYLSITEEDDMPWALIQAAVAS 118
           PHNH+ANQVVYTGTHDNDT RGWWD +K+ EKSNVLKYLSI EED++PWALI+AA++S
Sbjct: 461 PHNHDANQVVYTGTHDNDTIRGWWDVIKQEEKSNVLKYLSIAEEDEIPWALIKAALSS 518