Jatropha Genome Database

JcCB0425521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0425521.10 + phase: 0 /partial
         (418 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29815.m000502 conserved hypothetical protein                          550   e-157
29576.m000226 transcription factor, putative                          194   7e-50
30169.m006420 transcription factor, putative                          190   1e-48
29576.m000233 transcription factor, putative                          188   5e-48

>29815.m000502 conserved hypothetical protein
          Length = 499

 Score =  550 bits (1417), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 291/422 (68%), Positives = 309/422 (73%), Gaps = 12/422 (2%)

Query: 6   PKPQSPPSDEDE-HFIGDDVTSDGKRKMSPWQRMKWTDSMVRLLIMAVFYIGDEAGSE-V 63
           PKPQSP SDEDE  F GDD T DGKRK+SPWQRMKWTDSMVRLLIMAVFYIGDEAGSE  
Sbjct: 81  PKPQSPLSDEDEPGFTGDDSTGDGKRKVSPWQRMKWTDSMVRLLIMAVFYIGDEAGSEGN 140

Query: 64  NDP-TGKKKAGG-LSQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGK 121
           NDP TGKKKAGG LSQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGK
Sbjct: 141 NDPSTGKKKAGGGLSQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGK 200

Query: 122 GTACKVVENQSLLETMDLSPKMKEEVKKLLNSKHLFFREMCAYHNSCGHGSSGVASGTTN 181
           GTACKVVENQSLLETMDLSPKMKEEVKKLLNSKHLFFREMCAYHNSCGHGS+G+ASG TN
Sbjct: 201 GTACKVVENQSLLETMDLSPKMKEEVKKLLNSKHLFFREMCAYHNSCGHGSNGIASG-TN 259

Query: 182 HSPEVATDQSHAQHPHASHVQQQRCSHSSENAQLATNSRSETEGSKMGRRVSNXXXXXXX 241
           HSPE+ATDQSH QH  ASH+QQQRCSHS+ENAQ AT SR+E EGSKM +R+ N       
Sbjct: 260 HSPEIATDQSHPQHQQASHLQQQRCSHSTENAQFATISRTEAEGSKMAKRIRNEEDDEED 319

Query: 242 XXXXXXXXXXXXXXXXXAIEGNSRGQNXXXXXXXXXXXXXXKPSRKRQRTGIFAXXXXXX 301
                            AIEG SR QN              KP++KRQRTG+ +      
Sbjct: 320 YDESDEDEDEDEDDEDEAIEGTSRSQN--RHGHEDEEDHEEKPAQKRQRTGVHSLSSSLM 377

Query: 302 XXXXXXXXXXIQDGAKSPWEKKHWMKVRLMELEEQQVSYQRQALELEKQRLKWVKFSSKK 361
                     IQDGAKSPWEKKHWMK+R M+LEEQQ+SYQ QA ELEKQRLKWVKFSSKK
Sbjct: 378 QQLNSELMGVIQDGAKSPWEKKHWMKLRSMQLEEQQLSYQCQAFELEKQRLKWVKFSSKK 437

Query: 362 EREMERAKXXXXXXXXXXXXMVLLVRQKXXX-----XXXXXXXXXXXXXSSNKRSDPSSI 416
           EREME+AK            MVLL+RQK                     SSNKR DPSSI
Sbjct: 438 EREMEKAKLDNDRRMLESERMVLLIRQKELELLDLQQQQHHHHHQQQQLSSNKRGDPSSI 497

Query: 417 TG 418
           TG
Sbjct: 498 TG 499


>29576.m000226 transcription factor, putative
          Length = 445

 Score =  194 bits (493), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 97/170 (57%), Positives = 128/170 (75%), Gaps = 10/170 (5%)

Query: 4   TKPKPQSPPSDEDEHFIGDDVTSDGK------RKMSPWQRMKWTDSMVRLLIMAVFYIGD 57
           T  K +   SDEDE    +D   DG+      +K SPW+R+KWTD MVRLLI AV YIG+
Sbjct: 80  TGDKGKISTSDEDEPSYSEDGV-DGQNEASRGKKGSPWRRVKWTDKMVRLLITAVSYIGE 138

Query: 58  EAGSEVNDPTGKKKAGGLSQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVND 117
           +  S+ N   G ++   + Q+KGKWK VS+AM E+GF+VSPQQCEDKFNDLNKRYKR+ND
Sbjct: 139 DMSSDCN--GGIRRKFAVLQRKGKWKLVSKAMAERGFHVSPQQCEDKFNDLNKRYKRLND 196

Query: 118 ILGKGTACKVVENQSLLETMD-LSPKMKEEVKKLLNSKHLFFREMCAYHN 166
           ILG+GT+C+VVEN +LL+ +D L+ K K++V+K+L+SKHLF+ EMC+YHN
Sbjct: 197 ILGRGTSCQVVENPALLDVIDFLTEKAKDDVRKILSSKHLFYEEMCSYHN 246



 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 41/68 (60%)

Query: 322 KKHWMKVRLMELEEQQVSYQRQALELEKQRLKWVKFSSKKEREMERAKXXXXXXXXXXXX 381
           +K WM+   ++LEEQ++  Q + LELEKQR KW +FS K++ E+E+ +            
Sbjct: 371 QKQWMESCTLQLEEQKLQIQLEMLELEKQRFKWKRFSRKRDHELEKLRLENERMKLENER 430

Query: 382 MVLLVRQK 389
           M L +++K
Sbjct: 431 MALELKRK 438


>30169.m006420 transcription factor, putative
          Length = 454

 Score =  190 bits (483), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 87/146 (59%), Positives = 116/146 (79%), Gaps = 2/146 (1%)

Query: 21  GDDVTSDGKRKMSPWQRMKWTDSMVRLLIMAVFYIGDEAGSEVNDPTGKKKAGGLSQKKG 80
           GD+ +    +K SPWQRMKWTD++VRLLI  V  +GD+     +   G K+  G+ QKKG
Sbjct: 105 GDNSSGAKSKKGSPWQRMKWTDNVVRLLIAVVACVGDDGA--FDGVEGLKRKSGILQKKG 162

Query: 81  KWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGTACKVVENQSLLETMDLS 140
           KWK+VS+ ++ KG +VSPQQ EDKFNDLNKRYKR+NDILG+GT+C+VVEN +L+++M LS
Sbjct: 163 KWKTVSKILISKGCHVSPQQSEDKFNDLNKRYKRLNDILGRGTSCRVVENPALMDSMPLS 222

Query: 141 PKMKEEVKKLLNSKHLFFREMCAYHN 166
            K KE+V+K+L+SKHLF++EMCAYHN
Sbjct: 223 AKAKEDVRKILSSKHLFYKEMCAYHN 248



 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 48/78 (61%)

Query: 312 IQDGAKSPWEKKHWMKVRLMELEEQQVSYQRQALELEKQRLKWVKFSSKKEREMERAKXX 371
            QD + S WEKK W+  + ++L EQ+VS Q QA ELEKQR KW+++ SKK++E E+ +  
Sbjct: 342 FQDPSVSLWEKKEWINKQKLQLLEQRVSIQAQAFELEKQRFKWLRYCSKKDKEFEKLRLE 401

Query: 372 XXXXXXXXXXMVLLVRQK 389
                      VL +RQK
Sbjct: 402 NERMRLENEQSVLQLRQK 419


>29576.m000233 transcription factor, putative
          Length = 441

 Score =  188 bits (477), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 94/167 (56%), Positives = 126/167 (75%), Gaps = 10/167 (5%)

Query: 7   KPQSPPSDEDEHFIGDDVTSDGK------RKMSPWQRMKWTDSMVRLLIMAVFYIGDEAG 60
           K ++  SDEDE    +D  +DG       +K SPWQR+KWTD MVRLLI AV YIG++  
Sbjct: 79  KGKNSASDEDEPSYTED-GADGHNDPSRGKKGSPWQRVKWTDKMVRLLITAVSYIGEDVT 137

Query: 61  SEVNDPTGKKKAGGLSQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILG 120
           S+    +G ++   + QKKGKWKSVS+ M E+G  VSPQQCEDKFNDLNKRYK++ND+LG
Sbjct: 138 SDYG--SGMRRKFSVLQKKGKWKSVSKVMAERGHLVSPQQCEDKFNDLNKRYKKLNDMLG 195

Query: 121 KGTACKVVENQSLLETMD-LSPKMKEEVKKLLNSKHLFFREMCAYHN 166
           +GT+C+VVEN +LL+ +D L+ K K++V+K+L+SKHLF+ EMC+YHN
Sbjct: 196 RGTSCQVVENPALLDVIDYLTEKEKDDVRKILSSKHLFYEEMCSYHN 242



 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 46/74 (62%)

Query: 316 AKSPWEKKHWMKVRLMELEEQQVSYQRQALELEKQRLKWVKFSSKKEREMERAKXXXXXX 375
            K+ W +K WM+ R ++LEEQ++  Q + LELEKQR KW +FS K++RE+E+ +      
Sbjct: 361 TKAAWLQKQWMESRALQLEEQKLQIQIETLELEKQRFKWQRFSRKRDRELEKLRMENERM 420

Query: 376 XXXXXXMVLLVRQK 389
                 M L ++QK
Sbjct: 421 KLENERMALELKQK 434