Jatropha Genome Database

JcCB0424591.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0424591.10 - phase: 0 /partial
         (111 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29939.m000540 conserved hypothetical protein                          115   5e-27
33703.m000014 conserved hypothetical protein                           90   2e-19
29791.m000553 conserved hypothetical protein                           89   3e-19

>29939.m000540 conserved hypothetical protein
          Length = 153

 Score =  115 bits (288), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 57/82 (69%), Positives = 61/82 (74%)

Query: 27  SRFAISTFQAXXXXXXXXXXXXXXXXXLQLGRAEEETRRLTQIWEELEVMCDPMRKEVAM 86
           SRF IS+FQA                 LQLGRAEEET+RLTQIWEELE + DP RKEVAM
Sbjct: 24  SRFDISSFQAREEEIERKKMEVREKVELQLGRAEEETKRLTQIWEELESLADPTRKEVAM 83

Query: 87  VRKKIDLANRELKPLGQSCQKK 108
           VRKKID+ANRELKPLGQSCQKK
Sbjct: 84  VRKKIDVANRELKPLGQSCQKK 105


>33703.m000014 conserved hypothetical protein
          Length = 149

 Score = 89.7 bits (221), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/82 (56%), Positives = 53/82 (64%)

Query: 27  SRFAISTFQAXXXXXXXXXXXXXXXXXLQLGRAEEETRRLTQIWEELEVMCDPMRKEVAM 86
           SR A+STF+A                  QLGR EEET+RL  I EELE + DPMRKEVA+
Sbjct: 34  SRSALSTFRAKEEEIERKKLEVREKVQAQLGRVEEETKRLAMIREELEALADPMRKEVAL 93

Query: 87  VRKKIDLANRELKPLGQSCQKK 108
           VRKKID  N+ELKPLG + QKK
Sbjct: 94  VRKKIDAVNKELKPLGHTVQKK 115


>29791.m000553 conserved hypothetical protein
          Length = 173

 Score = 89.4 bits (220), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 45/82 (54%), Positives = 54/82 (65%)

Query: 27  SRFAISTFQAXXXXXXXXXXXXXXXXXLQLGRAEEETRRLTQIWEELEVMCDPMRKEVAM 86
           SR A++ F+A                  QLGRAEE T+RL +I EELE + DPMRKEV+M
Sbjct: 41  SRSALAMFRAKEEEIERKKMEVKDRVQAQLGRAEEATKRLAEIREELETLSDPMRKEVSM 100

Query: 87  VRKKIDLANRELKPLGQSCQKK 108
           VRKKID  NRELKPLG +CQ+K
Sbjct: 101 VRKKIDTVNRELKPLGLTCQRK 122