Jatropha Genome Database

JcCB0424221.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0424221.20 - phase: 2 /partial
         (95 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29929.m004752 two-component sensor histidine kinase bacteria, pu...   139   3e-34

>29929.m004752 two-component sensor histidine kinase bacteria,
           putative
          Length = 584

 Score =  139 bits (350), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 66/97 (68%), Positives = 80/97 (82%), Gaps = 5/97 (5%)

Query: 1   SSTMKSQSFNLSCVSDFESSQKSINWGMHPSTTLDDDFQVCWFQGDCYAMNLGLHNIELP 60
           +ST+K+Q FN +C+SD ES+QKS+NWGM P   LDDDFQVCWFQGD YAMN+G  NIELP
Sbjct: 484 TSTIKNQGFNPNCISDVESAQKSVNWGMSP---LDDDFQVCWFQGDYYAMNVGRQNIELP 540

Query: 61  EYCDPGLITEVPTHLHDAVRFDYEN--LYDPTEYALI 95
           E  DPGLI +VPTHL+DAVRFD ++  LYD TEY+L+
Sbjct: 541 ENYDPGLIADVPTHLYDAVRFDCDSTLLYDLTEYSLV 577