Jatropha Genome Database

JcCB0424221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0424221.10 + phase: 0 /pseudo/partial
         (139 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29929.m004751 conserved hypothetical protein                          128   7e-31

>29929.m004751 conserved hypothetical protein
          Length = 481

 Score =  128 bits (322), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 71/137 (51%), Positives = 85/137 (62%), Gaps = 23/137 (16%)

Query: 26  MLDXLYGSRTKSSTASGSK-----------------------FFQXXXXXXXXXXXXXSH 62
           +L  L G RTKSS+++GSK                       FFQ             + 
Sbjct: 345 ILQALSGDRTKSSSSNGSKERSSIISSPFSFRSEERAAKRKEFFQKLEEKNSAKEVEKTR 404

Query: 63  LHVKSKIPLTRPRSPKLGRKPSSYMVQEASFQHPQRPSVNAESSKRVVPKGNQSTTHSIT 122
           + VKSK+PLTRPRSPKLGRKPSS +VQE SF  P++PS +A SSKR+V KGNQS T S+T
Sbjct: 405 VQVKSKVPLTRPRSPKLGRKPSSNVVQETSFPLPRQPSAHAASSKRIVSKGNQSITRSVT 464

Query: 123 LLTRKKAHENASPNIQH 139
           LL +KKAHENASPNIQH
Sbjct: 465 LLPKKKAHENASPNIQH 481