Jatropha Genome Database

JcCB0424111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0424111.10 + phase: 2 /partial
         (103 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29889.m003276 DNA-directed RNA polymerase II, putative                169   2e-43

>29889.m003276 DNA-directed RNA polymerase II, putative
          Length = 266

 Score =  169 bits (428), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 78/104 (75%), Positives = 89/104 (85%), Gaps = 1/104 (0%)

Query: 1   NNILYPKEDKKQRILLYACRNCDHQEVADNNRVYRNEVQHSVTEFTQILQDVASDPTLPR 60
           NNILYPKED+ Q+ILLYACRNCDHQE+A++N VYRNEV HS  E TQ+LQDVA+DPTLPR
Sbjct: 163 NNILYPKEDRDQKILLYACRNCDHQEIAESNCVYRNEVHHSAAERTQVLQDVAADPTLPR 222

Query: 61  TKSVRCSACGHGEAVFLQATSR-EEGFTLFYVCCNPNCGNRWRD 103
           TK+V C  C H EAVF QAT+R EEG TLF+VCCNP CG+RWRD
Sbjct: 223 TKAVECQVCKHPEAVFFQATARGEEGMTLFFVCCNPICGHRWRD 266



 Score =  152 bits (383), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 71/89 (79%), Positives = 78/89 (87%)

Query: 1  NNILYPKEDKKQRILLYACRNCDHQEVADNNRVYRNEVQHSVTEFTQILQDVASDPTLPR 60
          NN+LYPKED+KQRILLYACRNC+HQEVAD+NRVYRNE+ HSV+E TQILQDVASDPTLPR
Sbjct: 11 NNVLYPKEDRKQRILLYACRNCEHQEVADSNRVYRNEIHHSVSEHTQILQDVASDPTLPR 70

Query: 61 TKSVRCSACGHGEAVFLQATSREEGFTLF 89
          TKSVRCSACGHGEAVFLQ    +    L 
Sbjct: 71 TKSVRCSACGHGEAVFLQGGGYDTVLRLL 99