Jatropha Genome Database

JcCB0423721.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0423721.10 + phase: 0 /partial
         (162 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

27810.m000636 conserved hypothetical protein                          116   5e-27

>27810.m000636 conserved hypothetical protein
          Length = 1054

 Score =  116 bits (291), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 58/88 (65%), Positives = 62/88 (70%), Gaps = 2/88 (2%)

Query: 51  KFESIMSEYGMQISRILLSQLHCADEDXXXXXXCILKKSIFKPNYSSGKDLTDSRQMDVX 110
           KFE  MSEYGMQISRILLSQLHC DED      CI K++IFKPN SSG+   DSRQMD  
Sbjct: 348 KFEITMSEYGMQISRILLSQLHCTDEDVVAVAVCIFKEAIFKPNNSSGR--ADSRQMDAL 405

Query: 111 XXXXXXXXDENDGIARAVVMLIAEYCSM 138
                   DE DGI RAVVMLIAEYCS+
Sbjct: 406 LPLLLNLLDEQDGITRAVVMLIAEYCSI 433