Jatropha Genome Database

JcCB0421511.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0421511.10 + phase: 1 /pseudo/partial
         (162 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m014487 conserved hypothetical protein                          140   2e-34
29903.m000183 conserved hypothetical protein                           79   1e-15

>30147.m014487 conserved hypothetical protein
          Length = 545

 Score =  140 bits (353), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 75/133 (56%), Positives = 83/133 (62%)

Query: 30  LKLKTRRAGCTVFTCDTRSLTDLITSILQRLGDDIDRNNLPQILYEDEDHDKVVLESDSD 89
            K++ ++     FT DTRSLTDLIT+ILQRLG+DIDRNNLPQILYED+DHDKVVLESDSD
Sbjct: 413 FKIEDKKGRMHRFTSDTRSLTDLITAILQRLGNDIDRNNLPQILYEDDDHDKVVLESDSD 472

Query: 90  LVTAVDHAKSAGLKGLRLHLDYXXXXXXXXXXXXXDLDYTHTDXXXXXXXXXXXXXXXXX 149
           LVTAV+HAK AG KGLRLHLDY             DL Y   D                 
Sbjct: 473 LVTAVEHAKLAGFKGLRLHLDYSGVRSRRGGSGSGDLAYAQKDAWAAAYSAVAAGAALVA 532

Query: 150 XXXXXXYLRRSGY 162
                 YLRRSGY
Sbjct: 533 GLGVLAYLRRSGY 545


>29903.m000183 conserved hypothetical protein
          Length = 546

 Score = 78.6 bits (192), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/70 (50%), Positives = 56/70 (80%), Gaps = 1/70 (1%)

Query: 42  FTCDTRSLTDLITSILQRLGDDIDRNNLPQILYEDEDHDKVVLESDSDLVTAVDHAKSAG 101
           F C T +L +L +++LQR+G  + + + PQ+LYED++ DKV+L +D DL++A++HAK+AG
Sbjct: 429 FNCGTENLDELTSALLQRIGVSLGQEH-PQLLYEDDEGDKVLLVTDGDLISAINHAKTAG 487

Query: 102 LKGLRLHLDY 111
           LK L+LHLD+
Sbjct: 488 LKVLKLHLDF 497