Jatropha Genome Database

JcCB0420241.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0420241.10 - phase: 0 /TE/pseudo/partial
         (160 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29608.m000209 conserved hypothetical protein                           76   7e-15
29607.m000244 hypothetical protein                                     76   8e-15
28657.m000384 conserved hypothetical protein                           71   3e-13
29769.m000452 conserved hypothetical protein                           64   2e-11
29642.m000286 conserved hypothetical protein                           59   1e-09
29813.m001504 nucleic acid binding protein, putative                   59   1e-09
29790.m000818 conserved hypothetical protein                           58   1e-09
30128.m009031 conserved hypothetical protein                           52   9e-08
30170.m013938 conserved hypothetical protein                           46   9e-06

>29608.m000209 conserved hypothetical protein
          Length = 273

 Score = 75.9 bits (185), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 2/123 (1%)

Query: 39  KCNVDATIHMTEGRSSYAGLVRNEAGQFLVACTGHFAGVLKPHIAKAIGLREVLSWLLTR 98
           KCN+D  + +   R  +  + +N++G F  A  G  +G L P +A+A+ LRE L W+   
Sbjct: 138 KCNIDVVVFVANNRLGFGFIFQNDSGTFRAATNGLISGPLDPQVAEALSLREDLCWVKGL 197

Query: 99  PIGRVLVEIDCLRLFQAVT-TGFNPXSDWTPVLEEIKQLLSQIPSSELVWVRRQGNKPAH 157
            +  V+ E DCL L  AV   G N  S +  ++ + +  L ++  + +V+V+R GN+ AH
Sbjct: 198 DLNYVVSESDCLTLVNAVNKVGVNS-SLFGLLIGDCRSFLKEMNHAHIVFVKRFGNRVAH 256

Query: 158 ALA 160
            LA
Sbjct: 257 LLA 259


>29607.m000244 hypothetical protein
          Length = 329

 Score = 75.9 bits (185), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 66/122 (54%)

Query: 39  KCNVDATIHMTEGRSSYAGLVRNEAGQFLVACTGHFAGVLKPHIAKAIGLREVLSWLLTR 98
           KCNVD  +    GRS +  ++R+ AG F++   G   G+    +A+AIGLRE + W+L+ 
Sbjct: 177 KCNVDGAVFTASGRSGFGMVIRDSAGSFVMGADGSSPGLFNVKLAEAIGLREAVQWVLSL 236

Query: 99  PIGRVLVEIDCLRLFQAVTTGFNPXSDWTPVLEEIKQLLSQIPSSELVWVRRQGNKPAHA 158
               V+ E D   +  AV +G     ++  V+ + + LL    +  + ++R+Q N  AH+
Sbjct: 237 GRSNVIFEYDAKVVVDAVLSGAADLFEFGAVIADCRLLLQHGCNYSVQFIRKQANLVAHS 296

Query: 159 LA 160
           LA
Sbjct: 297 LA 298


>28657.m000384 conserved hypothetical protein
          Length = 163

 Score = 70.9 bits (172), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 63/122 (51%)

Query: 39  KCNVDATIHMTEGRSSYAGLVRNEAGQFLVACTGHFAGVLKPHIAKAIGLREVLSWLLTR 98
           K N+DATI           ++++ AG F+ A    FAG   P IA+ + ++E LSW   R
Sbjct: 37  KVNMDATIFSNPDSMGVGCVMKDHAGLFVCAMAVSFAGAYIPEIAEGLAIQEALSWARDR 96

Query: 99  PIGRVLVEIDCLRLFQAVTTGFNPXSDWTPVLEEIKQLLSQIPSSELVWVRRQGNKPAHA 158
            +  V+ E+DCL + +A+       S    ++++ K L S I +    +V+R  N+ AH 
Sbjct: 97  QLLNVVFELDCLHIVEALLRKGTDRSSLGLIIKDCKLLSSSISNCSFAFVKRSRNEVAHK 156

Query: 159 LA 160
           LA
Sbjct: 157 LA 158


>29769.m000452 conserved hypothetical protein
          Length = 180

 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 46/71 (64%)

Query: 39  KCNVDATIHMTEGRSSYAGLVRNEAGQFLVACTGHFAGVLKPHIAKAIGLREVLSWLLTR 98
           KCN+DA+I++T+G  ++  + R+  G+FL A  G    ++ P +A+A+  RE LSWL T 
Sbjct: 102 KCNMDASIYLTKGNIAFGMVTRDADGRFLEARNGLINAIMDPLLAEALSCREALSWLKTA 161

Query: 99  PIGRVLVEIDC 109
              +VLVE DC
Sbjct: 162 GKEKVLVEYDC 172


>29642.m000286 conserved hypothetical protein
          Length = 346

 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 64/120 (53%)

Query: 41  NVDATIHMTEGRSSYAGLVRNEAGQFLVACTGHFAGVLKPHIAKAIGLREVLSWLLTRPI 100
           N    + +  G +    ++R+    F+   +  + G+++   ++ + LRE LSW+  +  
Sbjct: 197 NASQPVSIFTGETRIGMVLRDATRVFMCCASNCYEGLVQVRESETMRLREALSWIRGKWY 256

Query: 101 GRVLVEIDCLRLFQAVTTGFNPXSDWTPVLEEIKQLLSQIPSSELVWVRRQGNKPAHALA 160
            RV+ E+DC ++  AVT       ++  ++ E  +LL++  S  +++V+RQ N+ A+ LA
Sbjct: 257 QRVIFELDCQQIVHAVTNFLASVDEFGSLIRECAELLAENNSYSVIFVKRQANEIAYMLA 316


>29813.m001504 nucleic acid binding protein, putative
          Length = 483

 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 62/122 (50%)

Query: 39  KCNVDATIHMTEGRSSYAGLVRNEAGQFLVACTGHFAGVLKPHIAKAIGLREVLSWLLTR 98
           K NVDA+     G+S  + ++R+ AG ++         +  P +A+A  L+E LSW+  +
Sbjct: 352 KLNVDASSSAERGKSGASFVLRDNAGIWITGVLIIRPYIANPDVAEAWALKEALSWIHAK 411

Query: 99  PIGRVLVEIDCLRLFQAVTTGFNPXSDWTPVLEEIKQLLSQIPSSELVWVRRQGNKPAHA 158
            +  V +E DCLR  + +    +P S    +L++ + LL  +    LV+V    N  AH 
Sbjct: 412 GMEEVQIETDCLRNIELLEEELHPNSYLLCLLKDCQDLLRVLNRCNLVFVYGSANTVAHM 471

Query: 159 LA 160
           ++
Sbjct: 472 IS 473


>29790.m000818 conserved hypothetical protein
          Length = 191

 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 39  KCNVDATIHMTEGRSSYAGLVRNEAGQFLVACTGHFAGVLKPHIAKAIGLREVLSWLLTR 98
           K N DA I   + R+ Y  +VRN A   + A      GV + ++A+A+ +RE LSW+   
Sbjct: 62  KINEDAGIFQAQNRTGYGMVVRNHAANLVAARALIIHGVYEANLAEAMAVREALSWIKHM 121

Query: 99  PIGRVLVEIDCLRLFQAVTTGFNPXSDWTPVLEEIKQLLSQIPSSELVWVRRQGNKPAHA 158
              RV +++D L +  A+T+       +  +++  K +++ I  +    +RR  N  AH 
Sbjct: 122 NWSRVSIDMDSLGVCVALTSDN---LSFGLIIDGCKHVVANIHDAAFTCIRRSTNHCAHM 178

Query: 159 LA 160
           LA
Sbjct: 179 LA 180


>30128.m009031 conserved hypothetical protein
          Length = 223

 Score = 52.4 bits (124), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 2/112 (1%)

Query: 50  EGRSSYAGLVRNEAGQFLVACTGH-FAGVLKPHIAKAIGLREVLSWLLTRPIGRVLVEID 108
           E +   A +V +  G F VAC  H   G+ +P +A+A+ L+E + W +      V+ E D
Sbjct: 82  EMKIGMAAVVSDSNGTF-VACMAHAVLGLFEPRLAEAVALKEAIRWAIQMRFSLVVFESD 140

Query: 109 CLRLFQAVTTGFNPXSDWTPVLEEIKQLLSQIPSSELVWVRRQGNKPAHALA 160
                 A+ +     S++  +++E + LLS   + ++ +V+RQ N  AH LA
Sbjct: 141 SKIAVDAIRSLAADWSEFGIIIDECRSLLSLGLNFQVYFVKRQANMVAHVLA 192


>30170.m013938 conserved hypothetical protein
          Length = 92

 Score = 45.8 bits (107), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 38/75 (50%)

Query: 41  NVDATIHMTEGRSSYAGLVRNEAGQFLVACTGHFAGVLKPHIAKAIGLREVLSWLLTRPI 100
           NVDA +     +     ++R   G FL A    F G +   IA+A+ LRE L WL+ +  
Sbjct: 2   NVDAAMFANSNKVGVGRVLRVHEGNFLSAFVNSFPGNVVVLIAEALALREALQWLVEQRY 61

Query: 101 GRVLVEIDCLRLFQA 115
             V++E D L + QA
Sbjct: 62  NHVILESDSLLVVQA 76