Jatropha Genome Database

JcCB0417211.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0417211.10 - phase: 0 /pseudo/partial/short
         (34 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m014485 conserved hypothetical protein                           56   3e-09
29929.m004632 conserved hypothetical protein                           56   4e-09
30190.m010914 conserved hypothetical protein                           51   1e-07
30190.m010912 conserved hypothetical protein                           49   7e-07

>30147.m014485 conserved hypothetical protein
          Length = 69

 Score = 56.2 bits (134), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 25/29 (86%), Positives = 28/29 (96%)

Query: 1  MADWGPVIVAVVLFVLLTPGLLFQIPGKG 29
          MADWGPVI+AV+LFVLLTPGLLFQIPG+ 
Sbjct: 1  MADWGPVIIAVILFVLLTPGLLFQIPGRN 29


>29929.m004632 conserved hypothetical protein
          Length = 69

 Score = 55.8 bits (133), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 25/29 (86%), Positives = 29/29 (100%)

Query: 1  MADWGPVIVAVVLFVLLTPGLLFQIPGKG 29
          MADWGPV++AVVLFVLL+PGLLFQ+PGKG
Sbjct: 1  MADWGPVVIAVVLFVLLSPGLLFQLPGKG 29


>30190.m010914 conserved hypothetical protein
          Length = 64

 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/28 (82%), Positives = 26/28 (92%)

Query: 1  MADWGPVIVAVVLFVLLTPGLLFQIPGK 28
          M+DWGPV VAVVLF+LLTPGLL QIPG+
Sbjct: 1  MSDWGPVFVAVVLFILLTPGLLIQIPGR 28


>30190.m010912 conserved hypothetical protein
          Length = 72

 Score = 48.5 bits (114), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 20/27 (74%), Positives = 25/27 (92%)

Query: 2  ADWGPVIVAVVLFVLLTPGLLFQIPGK 28
          ADWGPV+VAV LF+LL+PGLLFQ+P +
Sbjct: 3  ADWGPVVVAVALFILLSPGLLFQLPAR 29