Jatropha Genome Database

JcCB0415641.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0415641.10 - phase: 1 /partial
         (144 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30122.m000356 LysM domain GPI-anchored protein 2 precursor, puta...   162   5e-41

>30122.m000356 LysM domain GPI-anchored protein 2 precursor,
           putative
          Length = 361

 Score =  162 bits (410), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 86/142 (60%), Positives = 97/142 (68%), Gaps = 3/142 (2%)

Query: 1   CNSSVSTTSIDYPLLVPNGTYFFTANSCVKCNCDAANNWTLQCEPSGFRPAAKSTWSTCP 60
           CNSSV+T+S+DYPLLVPNGTY FTANSCV+C CD+ANNW LQCEPSG    A STWSTCP
Sbjct: 220 CNSSVTTSSLDYPLLVPNGTYAFTANSCVRCKCDSANNWILQCEPSGLT-IANSTWSTCP 278

Query: 61  SMRCDXXXXXXXXXXXXXXXXXXXXXYAGFSSQNILTTLATVSTCPATGPGIESPDDNYA 120
            M+CD                     YAGFS+Q ILT LATVSTCPA+ PG  S  DNYA
Sbjct: 279 PMKCDGADNLSIGNSTNAGCNTTTCAYAGFSNQTILTALATVSTCPASTPG--SGSDNYA 336

Query: 121 SRISLSWSFLRISLPLIMLSVH 142
           S   +SW FL ISL L +L V+
Sbjct: 337 SSSGMSWKFLIISLHLFLLCVY 358