Jatropha Genome Database

JcCB0402451.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0402451.20 - phase: 0 /partial/short
         (49 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m014102 transcription regulator, putative                        97   2e-21
29736.m002007 transcription regulator, putative                        82   7e-17
29822.m003497 transcription regulator, putative                        81   8e-17
30147.m014106 DNA binding protein, putative                            52   9e-08

>30147.m014102 transcription regulator, putative
          Length = 91

 Score = 96.7 bits (239), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 48/49 (97%), Positives = 49/49 (100%)

Query: 1  VSAAKVLQETCNYIRNLHREVDDLSERLSELLATTDTAQAAIIRNLLMQ 49
          VSAAKVLQETCNYIR+LHREVDDLSERLSELLATTDTAQAAIIRNLLMQ
Sbjct: 43 VSAAKVLQETCNYIRSLHREVDDLSERLSELLATTDTAQAAIIRNLLMQ 91


>29736.m002007 transcription regulator, putative
          Length = 93

 Score = 81.6 bits (200), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 40/51 (78%), Positives = 48/51 (94%), Gaps = 2/51 (3%)

Query: 1  VSAAKVLQETCNYIRNLHREVDDLSERLSELLATT--DTAQAAIIRNLLMQ 49
          VSA+KVLQETCNYI++LHREVDDLS+RLSELLA+T  D+AQAAIIR+L M+
Sbjct: 43 VSASKVLQETCNYIKSLHREVDDLSDRLSELLASTDSDSAQAAIIRSLFME 93


>29822.m003497 transcription regulator, putative
          Length = 90

 Score = 81.3 bits (199), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 40/50 (80%), Positives = 46/50 (92%), Gaps = 2/50 (4%)

Query: 1  VSAAKVLQETCNYIRNLHREVDDLSERLSELLAT--TDTAQAAIIRNLLM 48
          VSA+KVLQETCNYIRNLHREVDDLSERLS+LLAT   D+ +AAIIR+L+M
Sbjct: 41 VSASKVLQETCNYIRNLHREVDDLSERLSQLLATIDADSPEAAIIRSLIM 90


>30147.m014106 DNA binding protein, putative
          Length = 89

 Score = 51.6 bits (122), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 24/42 (57%), Positives = 32/42 (76%)

Query: 1  VSAAKVLQETCNYIRNLHREVDDLSERLSELLATTDTAQAAI 42
          VS +K+LQETC+YIR+L  E DDLSE+LS+LL + + A   I
Sbjct: 39 VSVSKILQETCSYIRSLQSEADDLSEKLSQLLDSFNIADVDI 80