Jatropha Genome Database

JcCB0402451.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0402451.10 - phase: 1 /TE
         (447 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

27894.m000809 conserved hypothetical protein                           92   6e-19
50372.m000011 conserved hypothetical protein                           52   6e-07

>27894.m000809 conserved hypothetical protein
          Length = 188

 Score = 91.7 bits (226), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 68/104 (65%)

Query: 296 FDSDLPPEGRNHCKPLYIQIAVNGRDTRNVMVDNGSALCVCPLKMLSKFKIEESELEPSN 355
            D +LP EGR H +PLYI+  V G  +  VMVD+ S + +CPL+ L K+ +E+++LEP++
Sbjct: 1   MDKELPLEGREHNQPLYIEAMVKGIKSSCVMVDDRSRINICPLRFLDKYGLEKTDLEPTS 60

Query: 356 IVVKAYDNTMRNAKGTFKAKISTGAVESWVDVVVLDSLANYSLL 399
            V++A D + R A  TFKA +    +ES  +++VLD L +++  
Sbjct: 61  TVIRACDESKRQACRTFKALVKLRPIESVTELMVLDILISFAFF 104


>50372.m000011 conserved hypothetical protein
          Length = 123

 Score = 52.0 bits (123), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/42 (57%), Positives = 32/42 (76%)

Query: 389 VLDSLANYSLLLGRPWLHPLGAVLSTLHRKVKIPWGTDVVTV 430
           VLD  A+++LLLGRPW+H L AV STLH+KVK   G  V+++
Sbjct: 1   VLDIPASFNLLLGRPWIHALEAVPSTLHQKVKFIQGNRVISI 42