Jatropha Genome Database

JcCB0399861.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0399861.10 - phase: 1 /partial
         (113 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30128.m008714 conserved hypothetical protein                          186   2e-48

>30128.m008714 conserved hypothetical protein
          Length = 441

 Score =  186 bits (471), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 92/115 (80%), Positives = 98/115 (85%), Gaps = 2/115 (1%)

Query: 1   EHRRCYMVCPNGPRHSSTTGIYCNYDETARKSN--QSSSSGIQLYGQIERLLTETVRQSQ 58
           E RRC++V  +GPRHS T  IYCNYD+  RK N   SSSSGI+LYGQIERLLTETVRQSQ
Sbjct: 31  ERRRCHLVVADGPRHSRTARIYCNYDDATRKPNPSSSSSSGIKLYGQIERLLTETVRQSQ 90

Query: 59  DAWGGSKDWIEVEGAWVLKPRISRPKSVVHFVGGIFVGAAPQLTYRLFLERLVEK 113
           DAWGG KDW E+EGAWVLKPR S PKSVVHFVGGIFVGAAPQLTYRLFLERL EK
Sbjct: 91  DAWGGLKDWTEIEGAWVLKPRSSPPKSVVHFVGGIFVGAAPQLTYRLFLERLAEK 145