Jatropha Genome Database

JcCB0399111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0399111.10 + phase: 0 
         (91 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29822.m003497 transcription regulator, putative                       152   4e-38
29736.m002007 transcription regulator, putative                       124   9e-30
30147.m014102 transcription regulator, putative                       117   1e-27
30147.m014106 DNA binding protein, putative                            76   4e-15

>29822.m003497 transcription regulator, putative
          Length = 90

 Score =  152 bits (383), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 80/91 (87%), Positives = 84/91 (92%), Gaps = 1/91 (1%)

Query: 1  MSSRRPRQSASVPRISDEQIIELISKLRQLLPEIRDRRSDKVSASKVLQETCNYIRNLHR 60
          MS RR RQ  SVPRI+D+QII+L+SKLRQLLPEIR RR DKVSASKVLQETCNYIRNLHR
Sbjct: 1  MSGRRSRQ-PSVPRITDDQIIDLVSKLRQLLPEIRQRRPDKVSASKVLQETCNYIRNLHR 59

Query: 61 EVDDLSERLSQLLTTIDADSPEAAIIRSLIM 91
          EVDDLSERLSQLL TIDADSPEAAIIRSLIM
Sbjct: 60 EVDDLSERLSQLLATIDADSPEAAIIRSLIM 90


>29736.m002007 transcription regulator, putative
          Length = 93

 Score =  124 bits (311), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 60/77 (77%), Positives = 73/77 (94%)

Query: 15 ISDEQIIELISKLRQLLPEIRDRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLT 74
          ISD+QII+L+SKL+QL+PEIR+RRSDKVSASKVLQETCNYI++LHREVDDLS+RLS+LL 
Sbjct: 16 ISDDQIIDLVSKLQQLIPEIRNRRSDKVSASKVLQETCNYIKSLHREVDDLSDRLSELLA 75

Query: 75 TIDADSPEAAIIRSLIM 91
          + D+DS +AAIIRSL M
Sbjct: 76 STDSDSAQAAIIRSLFM 92


>30147.m014102 transcription regulator, putative
          Length = 91

 Score =  117 bits (293), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 58/77 (75%), Positives = 72/77 (93%), Gaps = 2/77 (2%)

Query: 15 ISDEQIIELISKLRQLLPEIRDRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLT 74
          I+D+QI++L+SKL+QLLPEIR+RRSDKVSA+KVLQETCNYIR+LHREVDDLSERLS+LL 
Sbjct: 16 ITDDQILDLVSKLQQLLPEIRNRRSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLA 75

Query: 75 TIDADSPEAAIIRSLIM 91
          T   D+ +AAIIR+L+M
Sbjct: 76 T--TDTAQAAIIRNLLM 90


>30147.m014106 DNA binding protein, putative
          Length = 89

 Score = 75.9 bits (185), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 61/88 (69%), Gaps = 3/88 (3%)

Query: 1  MSSRRPRQSASVPRISDEQIIELISKLRQLLPEIRDRRSDKVSASKVLQETCNYIRNLHR 60
          MSSRR   S +  + + +++ +L+ KL+ LLP++  R++ +VS SK+LQETC+YIR+L  
Sbjct: 1  MSSRR---SGAASKFTQDELNDLVLKLQALLPQLNQRQASRVSVSKILQETCSYIRSLQS 57

Query: 61 EVDDLSERLSQLLTTIDADSPEAAIIRS 88
          E DDLSE+LSQLL + +    +   +RS
Sbjct: 58 EADDLSEKLSQLLDSFNIADVDIETLRS 85