Jatropha Genome Database

JcCB0398651.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0398651.10 + phase: 0 
         (149 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

36347.m000009 conserved hypothetical protein                          114   2e-26
29889.m003296 conserved hypothetical protein                          103   3e-23
30098.m001734 phd finger protein, putative                             59   9e-10

>36347.m000009 conserved hypothetical protein
          Length = 180

 Score =  114 bits (284), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 52/91 (57%), Positives = 69/91 (75%), Gaps = 3/91 (3%)

Query: 41  EPNRIWGEKCTKADIVINQGPTAPLPSGIPTYTVEIMNVCVTGCDISGIHLTCGWFSSAR 100
           + NRI G  C+K DIVI QG   PLP G+P+YTV+++N+C   C IS IH++CGWFSS R
Sbjct: 93  DGNRI-GTSCSKDDIVIYQGSITPLPDGVPSYTVQVLNIC--DCSISNIHVSCGWFSSVR 149

Query: 101 LINPKIFKRLRYNDCLVNDGKPLVNGGTLSF 131
           LINP+IF+R+ ++DCLVNDG+ L  G  +SF
Sbjct: 150 LINPRIFRRIFFDDCLVNDGEALGPGEAISF 180


>29889.m003296 conserved hypothetical protein
          Length = 167

 Score =  103 bits (257), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 49/98 (50%), Positives = 66/98 (67%), Gaps = 3/98 (3%)

Query: 50  CTKADIVINQGPTAPLPSGIPTYTVEIMNVC-VTGCDISGIHLTCGWFSSARLINPKIFK 108
           C+  DI I+Q   +   SGIP Y V+I+N C V+GC  S IHL CGWF+SAR++NP +FK
Sbjct: 69  CSNRDISISQSRDST--SGIPQYIVQIVNTCSVSGCAPSDIHLHCGWFASARMVNPTVFK 126

Query: 109 RLRYNDCLVNDGKPLVNGGTLSFEYANTFHYPLSVSSV 146
           R+ Y+DCLVN GK L N   + F Y+N+F Y L+  + 
Sbjct: 127 RMSYDDCLVNGGKTLKNSQMIRFTYSNSFMYTLAFKTA 164


>30098.m001734 phd finger protein, putative
          Length = 128

 Score = 58.9 bits (141), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 54/108 (50%), Gaps = 10/108 (9%)

Query: 31  FLLCTALAMEEPNRIWGEKCTKADIVINQ---GPTAPLPSGIPTYTVEIMNVCVTGCDIS 87
           FLL  +LA    +   G KC      I Q   G   P     PT+ V++ N C   C + 
Sbjct: 13  FLLWISLACSSLHYGLGTKCETKAPAIQQTQVGYGYP-----PTFMVQVYNSCPM-CPVI 66

Query: 88  GIHLTCGWFSSARLINPKIFKRLRYNDCLVNDGKPLVNGGTLSFEYAN 135
            IHL CG F  A L+NP++ K L ++DC++N G PL      SF Y++
Sbjct: 67  NIHLKCGSFPQA-LVNPRLLKVLAFDDCVINGGLPLAPLQKFSFNYSH 113