Jatropha Genome Database

JcCB0398461.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0398461.20 + phase: 0 /partial
         (76 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29642.m000276 conserved hypothetical protein                           75   6e-15
27752.m000045 conserved hypothetical protein                           68   8e-13
29822.m003457 conserved hypothetical protein                           51   1e-07
29993.m001061 ubiquitin-protein ligase, putative                       49   4e-07

>29642.m000276 conserved hypothetical protein
          Length = 410

 Score = 75.5 bits (184), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 36/56 (64%), Positives = 43/56 (76%)

Query: 18 KIHQEATTMDSLPREIALNILSRLPITSLIHVKSVCLSWRSLAQDPLLATMHFSRM 73
          KI +     +SLP E+AL+ILSRLPIT LI+VK VC  WRSL Q PLLA+MHFSR+
Sbjct: 15 KIQEHPPGTESLPCELALDILSRLPITHLINVKRVCRFWRSLVQHPLLASMHFSRI 70


>27752.m000045 conserved hypothetical protein
          Length = 383

 Score = 68.2 bits (165), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 41/59 (69%)

Query: 17 KKIHQEATTMDSLPREIALNILSRLPITSLIHVKSVCLSWRSLAQDPLLATMHFSRMVK 75
          KK     +T+DSLPREI  +ILSR+   SL  +K VC SWR+LAQDPLL  +HFS  ++
Sbjct: 2  KKGKATNSTIDSLPREIMADILSRVTTPSLFIIKFVCQSWRNLAQDPLLVDLHFSHKIE 60


>29822.m003457 conserved hypothetical protein
          Length = 401

 Score = 50.8 bits (120), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 32/50 (64%)

Query: 23 ATTMDSLPREIALNILSRLPITSLIHVKSVCLSWRSLAQDPLLATMHFSR 72
          + + + LP+EI  +ILSR PI SL+  K V   W +  ++PLLA MH +R
Sbjct: 16 SESFEKLPQEIYFDILSRQPIVSLLECKPVSRHWYTSVRNPLLANMHLNR 65


>29993.m001061 ubiquitin-protein ligase, putative
          Length = 369

 Score = 49.3 bits (116), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/48 (45%), Positives = 32/48 (66%), Gaps = 1/48 (2%)

Query: 29 LPREIALNILSRLPITSLIHVKSVCLSWRSL-AQDPLLATMHFSRMVK 75
          LP EI ++ILSRLP+  LI  K VC +W+ L + DP  A +H  R+++
Sbjct: 8  LPFEIIIDILSRLPVKHLIQFKCVCRTWQYLISSDPEFAKLHLERVLQ 55