Jatropha Genome Database

JcCB0395701.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0395701.10 + phase: 0 /pseudo/partial
         (85 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29620.m000548 Lipid-A-disaccharide synthase, putative                  98   7e-22

>29620.m000548 Lipid-A-disaccharide synthase, putative
          Length = 469

 Score = 98.2 bits (243), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 47/79 (59%), Positives = 62/79 (78%), Gaps = 1/79 (1%)

Query: 4  KIIKNVNAGADMGFLR-QLRRYISVSSKTVMDIAGKDGELRVFVVAGEVSGDTIGSRLMA 62
          +I  N++      FL+   RRY+SV+ +++M+ A ++GELRVF+ AGEVSGD+IGSRLMA
Sbjct: 7  RIWNNLSNNTTALFLKLHRRRYVSVTGRSIMEGACRNGELRVFIFAGEVSGDSIGSRLMA 66

Query: 63 SLKKLSPTPIRFAGVGGVL 81
          SLK LSPTPIRFAGVGG +
Sbjct: 67 SLKNLSPTPIRFAGVGGFM 85