Jatropha Genome Database

JcCB0394911.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0394911.10 - phase: 0 /partial
         (473 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29727.m000488 DNA binding protein, putative                           688   0.0  

>29727.m000488 DNA binding protein, putative
          Length = 1374

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/451 (75%), Positives = 375/451 (83%), Gaps = 4/451 (0%)

Query: 1   AIESGRLPGDILDDIPRKYVNGTLICEVRDYRKCPPEQGSCIPSVGWLPIVNRVRLRMSL 60
           AIESGRLPGDILDDIP KYVNGTL+CEVRDYRKC PEQGS IPS+  LPIVNRVRLRMSL
Sbjct: 118 AIESGRLPGDILDDIPCKYVNGTLMCEVRDYRKCVPEQGSSIPSMNGLPIVNRVRLRMSL 177

Query: 61  ENVVKDIPLISDNSWTYGDLMEVESRILKALQPRLFLDPTPKLDRLCNNPTATXXXXXXX 120
           ENVVKDIPL+SDNSWTYGDLMEVESRILKALQP+L LDPTPKLDRLCN+P  T       
Sbjct: 178 ENVVKDIPLLSDNSWTYGDLMEVESRILKALQPQLCLDPTPKLDRLCNDPAPTKLSLGMS 237

Query: 121 XXXXXXXXQMPEVTVTSSSRIHGKKVCIDRVLESSNSRLGDSGMISGNMMPQSVQENLTT 180
                   QMPEVTVTS+SRIHGKKVCIDRV ESSN RLGDS +ISGNM+PQS QENLTT
Sbjct: 238 SLRRKRLRQMPEVTVTSNSRIHGKKVCIDRVPESSNGRLGDSAIISGNMLPQSGQENLTT 297

Query: 181 QNLVP-NMLPLRARSFVSDGNVSALPLVSQQSRYQLGLGTPRSMQDQGSGSLVNIPGASP 239
           QNL P N+L L ARSF+SDGNV A+PLV+QQSRYQ+G+ TPRSMQDQGSGSLVNI GASP
Sbjct: 298 QNLGPSNLLALGARSFISDGNVPAMPLVAQQSRYQMGVSTPRSMQDQGSGSLVNISGASP 357

Query: 240 AGQDMMITYGDHINSGASLHGKRENQDGQMSPLSSFNKRARVTSVGPDGMQQQQLGPHID 299
           A QDMMI YGD +N GASLH K+ENQDGQMSPLSS NKRAR+TSV PDG+ QQQ+GP++D
Sbjct: 358 ATQDMMIAYGDTMNPGASLHSKKENQDGQMSPLSSLNKRARLTSVAPDGIHQQQIGPNMD 417

Query: 300 GLHASDMNWKNSLLPHQATARGIHYANTGIQKYPQQVFEGVMNQNAMPTSFSAPQQGVRF 359
            ++ASD+NWKNSLL  QA ARGIHYAN GIQKYPQQ+FEGVMNQNA+P SFSA Q G+RF
Sbjct: 418 SVNASDLNWKNSLLHQQAMARGIHYANAGIQKYPQQMFEGVMNQNAVPASFSAAQPGLRF 477

Query: 360 GPKEEQFETEKLDVSELNQGKND--MMDTEMGHXXXXXXXXXXXXXXXXMRSNFSQTAWN 417
           GPKEEQFETEKLD SE++QGKND  +++TE GH                MRSNF Q AWN
Sbjct: 478 GPKEEQFETEKLDGSEISQGKNDIQILETETGHLDPQVSRLQQRLPPHHMRSNFPQAAWN 537

Query: 418 NLSQDSRKEEQIQGKRKTVQSPRLSAGTFPQ 448
           NLSQDSRK++Q Q KRKTVQSPRLSAG  PQ
Sbjct: 538 NLSQDSRKDDQFQ-KRKTVQSPRLSAGALPQ 567