Jatropha Genome Database

JcCB0392311.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0392311.10 + phase: 0 
         (143 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29693.m001989 conserved hypothetical protein                          142   4e-35
29693.m001988 conserved hypothetical protein                          118   9e-28

>29693.m001989 conserved hypothetical protein
          Length = 139

 Score =  142 bits (359), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 82/140 (58%), Positives = 91/140 (65%), Gaps = 11/140 (7%)

Query: 1   MRRNCNLELRLFPFPDSDD--DHRRYFVDESNKSPXXXXXXXXXXXXXXXKLTIFYNGNI 58
           MRRNCNLELRLFPF D DD   H     D SNKSP               +LTIFYNGN+
Sbjct: 1   MRRNCNLELRLFPFSDPDDHLQHSSSMEDFSNKSPRQEGQQQQ-------QLTIFYNGNV 53

Query: 59  CVCDVTELQARNILMLASREMDDKIRSAXXXXXXXXXXXX--XXVYSPNNGLSMKRSLQR 116
           CVCDVT+ QAR IL+LAS+EM+ K R +                +YSPNNGLSMKRSLQR
Sbjct: 54  CVCDVTDFQARAILLLASKEMEHKPRRSPSGSSSEPASPTLPSPIYSPNNGLSMKRSLQR 113

Query: 117 FLQKRNHRIQATYPYNINGR 136
           FLQKRNHRIQAT PY+IN R
Sbjct: 114 FLQKRNHRIQATCPYSINRR 133


>29693.m001988 conserved hypothetical protein
          Length = 164

 Score =  118 bits (296), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 68/139 (48%), Positives = 80/139 (57%), Gaps = 7/139 (5%)

Query: 1   MRRNCNLELRLFPFPDSDDDHRR---YFVDESNKSPXXXXXXXXXXXXXXXKLTIFYNGN 57
           MRRNC+LELR  PF DS  +HR      V     S                +LTIFYNG 
Sbjct: 25  MRRNCSLELRPVPFSDSGHNHREQQAMSVSFLLVSSFFLSVILSESPQERQQLTIFYNGR 84

Query: 58  ICVCDVTELQARNILMLASREMDDKIRSAXXXX----XXXXXXXXXXVYSPNNGLSMKRS 113
           +CVC VTELQAR IL LASREM+DK++++                  + SP+ GLSMKRS
Sbjct: 85  VCVCYVTELQARAILSLASREMEDKMKTSLLGTPTGRSEFVSPLPSPLCSPSTGLSMKRS 144

Query: 114 LQRFLQKRNHRIQATYPYN 132
           +QRFLQKR HR QAT PYN
Sbjct: 145 IQRFLQKRKHRAQATSPYN 163