Jatropha Genome Database

JcCB0389891.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0389891.20 - phase: 0 
         (99 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30153.m000741 porphobilinogen deaminase, putative                     139   3e-34

>30153.m000741 porphobilinogen deaminase, putative
          Length = 372

 Score =  139 bits (350), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 71/77 (92%), Positives = 74/77 (96%), Gaps = 1/77 (1%)

Query: 10  VLENFRGNVQTRLRKLNEGVVQATLLALAGLKRLNMTENVTSILSIDDMLPAVAQGAIGI 69
           VLENFRGNVQTRLRKLNEGVVQATLLALAGLKRLNMTENVTS+LSIDDMLPAVAQGAIGI
Sbjct: 208 VLENFRGNVQTRLRKLNEGVVQATLLALAGLKRLNMTENVTSVLSIDDMLPAVAQGAIGI 267

Query: 70  ACRSNDDKMVRLYLSNL 86
           ACRSNDDKM   YL++L
Sbjct: 268 ACRSNDDKMAN-YLASL 283