Jatropha Genome Database

JcCB0386201.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0386201.10 - phase: 0 
         (218 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29634.m002088 ring finger protein, putative                           146   6e-36

>29634.m002088 ring finger protein, putative
          Length = 316

 Score =  146 bits (369), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 105/217 (48%), Positives = 113/217 (52%), Gaps = 22/217 (10%)

Query: 6   KLGSGEAKSIGXXXXXXXXXXXXXXXXX-LNLGSA--NDNNGDEEEQEAQPPRQSS-RRT 61
           KLG GEAKS                    LNLGS+     NG++E+    PPRQSS RRT
Sbjct: 5   KLGLGEAKSNNNSSSSSTKEAEKEEEKANLNLGSSPSATENGEQED----PPRQSSSRRT 60

Query: 62  PFTNLSQVDADLALARTLQEQERAYMMLRFGN-EGSDYGSWEAGSYF------PXXXXXX 114
           PFTNLSQVDADLALARTLQEQERAYMMLRF N EGSDYGSWEA SY              
Sbjct: 61  PFTNLSQVDADLALARTLQEQERAYMMLRFNNIEGSDYGSWEAASYLHHHDDDDFGDPDD 120

Query: 115 XXXXXXXXXXXXXXXXXXXXXXXXXSMDAFDVHAHTDADVDNNPAVDLDPAMFSSDEAYA 174
                                     +DAFDVH    A      A DLDP MFSSDEAYA
Sbjct: 121 DDDDDDDDDDETDGDDDDEDDHGTDDVDAFDVHESGGA------AADLDPCMFSSDEAYA 174

Query: 175 RALQDXXXXXXXXXXXXXXGINEREVEDVEDLGANSQ 211
           RALQD              GIN+ +VED +D G NSQ
Sbjct: 175 RALQDAEEREMAARLLAFAGIND-QVEDTDDHGGNSQ 210