Jatropha Genome Database

JcCB0384321.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0384321.10 - phase: 2 /partial
         (176 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29772.m000314 40S ribosomal protein S6, putative                      224   2e-59
29908.m006065 40S ribosomal protein S6, putative                      223   4e-59
29806.m000942 40S ribosomal protein S6, putative                      207   2e-54

>29772.m000314 40S ribosomal protein S6, putative
          Length = 247

 Score =  224 bits (571), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 111/146 (76%), Positives = 117/146 (80%), Gaps = 5/146 (3%)

Query: 1   FKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIV 60
           FKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCF                 CIV
Sbjct: 45  FKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIV 104

Query: 61  SQDLSVLNLVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRR 120
           SQDLSVLNLVIVKKGENDLPGLTD EKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRR
Sbjct: 105 SQDLSVLNLVIVKKGENDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRR 164

Query: 121 TFTTKSGNISLLRYIYNSPAIVCIIS 146
           TFTTKSG     + +  +P I  +++
Sbjct: 165 TFTTKSG-----KKVSKAPKIQRLVT 185


>29908.m006065 40S ribosomal protein S6, putative
          Length = 249

 Score =  223 bits (568), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 110/146 (75%), Positives = 118/146 (80%), Gaps = 5/146 (3%)

Query: 1   FKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIV 60
           FKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCF                 CIV
Sbjct: 45  FKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIV 104

Query: 61  SQDLSVLNLVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRR 120
           SQDLSVLNLVIVKKG+NDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRR
Sbjct: 105 SQDLSVLNLVIVKKGDNDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRR 164

Query: 121 TFTTKSGNISLLRYIYNSPAIVCIIS 146
           +FTTKSG     + +  +P I  +++
Sbjct: 165 SFTTKSG-----KKVSKAPKIQRLVT 185


>29806.m000942 40S ribosomal protein S6, putative
          Length = 197

 Score =  207 bits (527), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 102/138 (73%), Positives = 109/138 (78%), Gaps = 5/138 (3%)

Query: 9   MGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSQDLSVLN 68
           MGGCDKQGFPMKQGVLT GRVRLLLHRGTPCF                 CIVSQDLSVLN
Sbjct: 1   MGGCDKQGFPMKQGVLTSGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSQDLSVLN 60

Query: 69  LVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGN 128
           LVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTK+G 
Sbjct: 61  LVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTG- 119

Query: 129 ISLLRYIYNSPAIVCIIS 146
               + +  +P I  +++
Sbjct: 120 ----KKVSKAPKIQRLVT 133