Jatropha Genome Database

JcCB0383651.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0383651.10 + phase: 0 /partial
         (68 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29989.m000434 60S ribosomal protein L18a, putative                    106   2e-24
29693.m002025 60S ribosomal protein L18a, putative                    103   2e-23

>29989.m000434 60S ribosomal protein L18a, putative
          Length = 178

 Score =  106 bits (264), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 47/59 (79%), Positives = 54/59 (91%)

Query: 2  QFHQYQVVGRGLPTENDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVRRAMAKYLLL 60
          +FHQYQVVGR LPTEND+HPKIYRMKLW+TNEVRAKSKFWYFLRKLKKV+R+  + L +
Sbjct: 5  RFHQYQVVGRALPTENDDHPKIYRMKLWSTNEVRAKSKFWYFLRKLKKVKRSNGQVLAI 63


>29693.m002025 60S ribosomal protein L18a, putative
          Length = 303

 Score =  103 bits (256), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 46/60 (76%), Positives = 53/60 (88%)

Query: 1   MQFHQYQVVGRGLPTENDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVRRAMAKYLLL 60
           + FHQYQVVGRGLPTE D+HPKIYRMKLWATNE RAKSKFWYFLRKLKKV+++  + L +
Sbjct: 129 IAFHQYQVVGRGLPTEADDHPKIYRMKLWATNEFRAKSKFWYFLRKLKKVKKSNGQVLAI 188